miRNA display CGI


Results 81 - 100 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 95905 0.68 0.773031
Target:  5'- cGUGCucGCGGCGaCGGCGGcCGcGCgcgCCu -3'
miRNA:   3'- -CACG--CGCUGC-GCCGCUaGCaCGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 58037 0.67 0.782272
Target:  5'- -cGCGCucuuCGaCGGCGG-CGUGCUcgCCa -3'
miRNA:   3'- caCGCGcu--GC-GCCGCUaGCACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 30478 0.67 0.800345
Target:  5'- -aGCGCGA--CGGUGA-CGUGgUUCCc -3'
miRNA:   3'- caCGCGCUgcGCCGCUaGCACgAAGG- -5'
25520 5' -57.2 NC_005337.1 + 80373 0.67 0.800345
Target:  5'- -cGCGcCGGuCGCGGaccCGGUCGUGUggcugCCg -3'
miRNA:   3'- caCGC-GCU-GCGCC---GCUAGCACGaa---GG- -5'
25520 5' -57.2 NC_005337.1 + 43883 0.67 0.808287
Target:  5'- cGUGCGCGACGCgcacacguaccacGGCcAUCucaGUGCcgggcUCCg -3'
miRNA:   3'- -CACGCGCUGCG-------------CCGcUAG---CACGa----AGG- -5'
25520 5' -57.2 NC_005337.1 + 1433 0.67 0.817818
Target:  5'- cGUG-GUGuAUGcCGGCGAUCGUGCa--- -3'
miRNA:   3'- -CACgCGC-UGC-GCCGCUAGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 102018 0.7 0.634702
Target:  5'- cGUGCaGCG-CGCGGgcgUGAUCGcguacgccUGCUUCCc -3'
miRNA:   3'- -CACG-CGCuGCGCC---GCUAGC--------ACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 59266 0.7 0.60422
Target:  5'- gGUGCGCGucaGCGGCGGccgccUCGUGUa--- -3'
miRNA:   3'- -CACGCGCug-CGCCGCU-----AGCACGaagg -5'
25520 5' -57.2 NC_005337.1 + 111724 0.71 0.563894
Target:  5'- -cGCGCGucCGCGGUGAagGU-CUUCCc -3'
miRNA:   3'- caCGCGCu-GCGCCGCUagCAcGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 92098 0.69 0.665165
Target:  5'- -cGCGCagcugGACGCGGUGuccgaGUCGgUGCUcuUCCa -3'
miRNA:   3'- caCGCG-----CUGCGCCGC-----UAGC-ACGA--AGG- -5'
25520 5' -57.2 NC_005337.1 + 93746 0.69 0.682337
Target:  5'- -cGCGCGcCGCGGCGGcugcaugccgcaccUCGU-CUUCg -3'
miRNA:   3'- caCGCGCuGCGCCGCU--------------AGCAcGAAGg -5'
25520 5' -57.2 NC_005337.1 + 36897 0.69 0.69539
Target:  5'- -cGCGCGGCGCGGCGug---GCcgUCa -3'
miRNA:   3'- caCGCGCUGCGCCGCuagcaCGa-AGg -5'
25520 5' -57.2 NC_005337.1 + 70360 0.66 0.861499
Target:  5'- gGUGCGcCGcCGCacGUGGUCGcguccguagaaguacUGCUUCCg -3'
miRNA:   3'- -CACGC-GCuGCGc-CGCUAGC---------------ACGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 105790 0.71 0.573921
Target:  5'- -cGCGCGccGCGCGGcCGcAUCcGUGCU-CCa -3'
miRNA:   3'- caCGCGC--UGCGCC-GC-UAG-CACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 99524 0.69 0.685356
Target:  5'- cUGCGaCGACGCGGCccg-GUGCgccgCCg -3'
miRNA:   3'- cACGC-GCUGCGCCGcuagCACGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 49365 0.69 0.68435
Target:  5'- -gGCGCG-UGCGGCGGcuacuguucgaccUCGUGCUcacggUCUu -3'
miRNA:   3'- caCGCGCuGCGCCGCU-------------AGCACGA-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 99408 0.71 0.563894
Target:  5'- cUGCGCaccgcGgGCGGCGGgugCGUGCUgagCCg -3'
miRNA:   3'- cACGCGc----UgCGCCGCUa--GCACGAa--GG- -5'
25520 5' -57.2 NC_005337.1 + 15336 0.67 0.800345
Target:  5'- -cGCGCGACGCacgcuGCGcccgCGcgacGCUUCCa -3'
miRNA:   3'- caCGCGCUGCGc----CGCua--GCa---CGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 96100 0.67 0.800345
Target:  5'- -cGCG-GGCGCGGCGGagGacaUGCggCCg -3'
miRNA:   3'- caCGCgCUGCGCCGCUagC---ACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 9931 0.67 0.809161
Target:  5'- -aGCGCGGCcuGauGCGAUCGcGCcgcgUCCa -3'
miRNA:   3'- caCGCGCUG--CgcCGCUAGCaCGa---AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.