miRNA display CGI


Results 101 - 120 of 184 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25520 5' -57.2 NC_005337.1 + 9931 0.67 0.809161
Target:  5'- -aGCGCGGCcuGauGCGAUCGcGCcgcgUCCa -3'
miRNA:   3'- caCGCGCUG--CgcCGCUAGCaCGa---AGG- -5'
25520 5' -57.2 NC_005337.1 + 129534 0.67 0.800345
Target:  5'- -cGCGCGGCGCGaGCGucCGUGa-UCUc -3'
miRNA:   3'- caCGCGCUGCGC-CGCuaGCACgaAGG- -5'
25520 5' -57.2 NC_005337.1 + 74544 0.67 0.791379
Target:  5'- -cGCGCuccgccGCGCGGCGcgUGaUGCUggCCg -3'
miRNA:   3'- caCGCGc-----UGCGCCGCuaGC-ACGAa-GG- -5'
25520 5' -57.2 NC_005337.1 + 15336 0.67 0.800345
Target:  5'- -cGCGCGACGCacgcuGCGcccgCGcgacGCUUCCa -3'
miRNA:   3'- caCGCGCUGCGc----CGCua--GCa---CGAAGG- -5'
25520 5' -57.2 NC_005337.1 + 121989 0.67 0.791379
Target:  5'- cGUGCGCGAgcuccUGCGcGCGGg-GUGCgacCCg -3'
miRNA:   3'- -CACGCGCU-----GCGC-CGCUagCACGaa-GG- -5'
25520 5' -57.2 NC_005337.1 + 13763 0.71 0.553914
Target:  5'- -cGCGCGcccgaACGCGGCGAggggcgccaggUCGUaGCUcgugUCCg -3'
miRNA:   3'- caCGCGC-----UGCGCCGCU-----------AGCA-CGA----AGG- -5'
25520 5' -57.2 NC_005337.1 + 78154 0.67 0.782272
Target:  5'- -cGCGC-ACGCuGGCGAUgcCGUGCg-CCu -3'
miRNA:   3'- caCGCGcUGCG-CCGCUA--GCACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 65533 0.67 0.782272
Target:  5'- gGUGCGCGuGCGCucgaaagaGGUGAUCGcgGaCUUCa -3'
miRNA:   3'- -CACGCGC-UGCG--------CCGCUAGCa-C-GAAGg -5'
25520 5' -57.2 NC_005337.1 + 99524 0.69 0.685356
Target:  5'- cUGCGaCGACGCGGCccg-GUGCgccgCCg -3'
miRNA:   3'- cACGC-GCUGCGCCGcuagCACGaa--GG- -5'
25520 5' -57.2 NC_005337.1 + 49365 0.69 0.68435
Target:  5'- -gGCGCG-UGCGGCGGcuacuguucgaccUCGUGCUcacggUCUu -3'
miRNA:   3'- caCGCGCuGCGCCGCU-------------AGCACGA-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 128322 0.69 0.675278
Target:  5'- -cGCGCGGCGCGaGCGcgacUGCUcggUCCa -3'
miRNA:   3'- caCGCGCUGCGC-CGCuagcACGA---AGG- -5'
25520 5' -57.2 NC_005337.1 + 100278 0.69 0.675278
Target:  5'- -cGCGCG-CGCaagaGGCGGUCcGUGCgcaccUUCCu -3'
miRNA:   3'- caCGCGCuGCG----CCGCUAG-CACG-----AAGG- -5'
25520 5' -57.2 NC_005337.1 + 26084 0.69 0.675278
Target:  5'- -aGCGCGGCGCGGgGAagCGccGCcggaugUCCa -3'
miRNA:   3'- caCGCGCUGCGCCgCUa-GCa-CGa-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 1643 0.7 0.655026
Target:  5'- aUGCGCGcgccCGCGGCGA-CGaGCUUggCCg -3'
miRNA:   3'- cACGCGCu---GCGCCGCUaGCaCGAA--GG- -5'
25520 5' -57.2 NC_005337.1 + 80630 0.7 0.644869
Target:  5'- -aGCGCG-CGUGGCGGaagacguagUCGUGCccgaacUCCu -3'
miRNA:   3'- caCGCGCuGCGCCGCU---------AGCACGa-----AGG- -5'
25520 5' -57.2 NC_005337.1 + 96100 0.67 0.800345
Target:  5'- -cGCG-GGCGCGGCGGagGacaUGCggCCg -3'
miRNA:   3'- caCGCgCUGCGCCGCUagC---ACGaaGG- -5'
25520 5' -57.2 NC_005337.1 + 13927 0.68 0.773031
Target:  5'- cGUGgGCgGGCGCaGCcccGUCGUGCU-CCa -3'
miRNA:   3'- -CACgCG-CUGCGcCGc--UAGCACGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 46461 0.68 0.773031
Target:  5'- -cGCGCGGCGCGcCGG-CGaGCUcCCg -3'
miRNA:   3'- caCGCGCUGCGCcGCUaGCaCGAaGG- -5'
25520 5' -57.2 NC_005337.1 + 38594 0.67 0.782272
Target:  5'- -gGCGUGGCGCGaGCGcagcgugggCGUGCUggggaacCCg -3'
miRNA:   3'- caCGCGCUGCGC-CGCua-------GCACGAa------GG- -5'
25520 5' -57.2 NC_005337.1 + 52089 0.67 0.782272
Target:  5'- cGUGCGCGcC-CGGCGGccgCGUGCa--- -3'
miRNA:   3'- -CACGCGCuGcGCCGCUa--GCACGaagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.