Results 61 - 80 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25521 | 3' | -55.6 | NC_005337.1 | + | 97673 | 0.67 | 0.859259 |
Target: 5'- ---cGCUccaGGCCGCGGGcgugcacgUgGUGGACGUc -3' miRNA: 3'- cucaUGA---CCGGCGCCU--------AgUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 99431 | 0.81 | 0.191899 |
Target: 5'- -cGUGCUGaGCCGCGGcgugggccaccUCGUGGACGCg -3' miRNA: 3'- cuCAUGAC-CGGCGCCu----------AGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 102940 | 0.68 | 0.812762 |
Target: 5'- uGGUGCUGGugcagugcgagaacaCCGUGG-UCGUGGggauGCGCu -3' miRNA: 3'- cUCAUGACC---------------GGCGCCuAGUACC----UGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 103197 | 0.68 | 0.818019 |
Target: 5'- ---cGCUGaaccCCGC-GAUCGUGGACGCc -3' miRNA: 3'- cucaUGACc---GGCGcCUAGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 103887 | 0.77 | 0.326537 |
Target: 5'- cAGcUGCUGGCCGCGcgcGA-CAUGGACGUg -3' miRNA: 3'- cUC-AUGACCGGCGC---CUaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 105442 | 0.68 | 0.817147 |
Target: 5'- gGAGUacauGCUGGCCGCcaucuucuuccggGuGGUCGUGcugcGGCGCa -3' miRNA: 3'- -CUCA----UGACCGGCG-------------C-CUAGUAC----CUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 105505 | 0.67 | 0.859259 |
Target: 5'- gGAGUuCgUGGCgcagaucauCGCGGccgcCAUGGACGCg -3' miRNA: 3'- -CUCAuG-ACCG---------GCGCCua--GUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 109007 | 0.74 | 0.49043 |
Target: 5'- cGAGgag-GGCuCGCGGAaCGUGGGCGUg -3' miRNA: 3'- -CUCaugaCCG-GCGCCUaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 112859 | 0.68 | 0.809223 |
Target: 5'- ---aGCUGGCCGCGGcccacGUCGacGAUGCc -3' miRNA: 3'- cucaUGACCGGCGCC-----UAGUacCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 115030 | 0.81 | 0.193842 |
Target: 5'- -cGUGCUGGCCaagcucaucagacucGCGGA-CGUGGACGCc -3' miRNA: 3'- cuCAUGACCGG---------------CGCCUaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 115485 | 0.66 | 0.901811 |
Target: 5'- cGGUGCacgcacggGGCCGUGGAcgUCA-GGuGCGCc -3' miRNA: 3'- cUCAUGa-------CCGGCGCCU--AGUaCC-UGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 122770 | 1.12 | 0.001745 |
Target: 5'- gGAGUACUGGCCGCGGAUCAUGGACGCg -3' miRNA: 3'- -CUCAUGACCGGCGCCUAGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 128780 | 0.67 | 0.874339 |
Target: 5'- uGGUagcACgGGUgCGCGcGAUCAUGGGCGg -3' miRNA: 3'- cUCA---UGaCCG-GCGC-CUAGUACCUGCg -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 129884 | 0.66 | 0.901811 |
Target: 5'- cGGUGgUaGCgGUGGAUC-UGGugGCa -3' miRNA: 3'- cUCAUgAcCGgCGCCUAGuACCugCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 130068 | 0.68 | 0.818019 |
Target: 5'- -cGUugUGGCCGCG--UCGcuGACGCa -3' miRNA: 3'- cuCAugACCGGCGCcuAGUacCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 130637 | 0.73 | 0.509905 |
Target: 5'- ---gACgaGGCCGCGGcgC-UGGACGCa -3' miRNA: 3'- cucaUGa-CCGGCGCCuaGuACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 130643 | 0.69 | 0.743566 |
Target: 5'- ---aGCUGGgCGCGGA-CGUGcGCGCg -3' miRNA: 3'- cucaUGACCgGCGCCUaGUACcUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 130734 | 0.73 | 0.5287 |
Target: 5'- cGAGcGCucgUGGCCGCuGGGUCcgacgugugcaccGUGGACGCc -3' miRNA: 3'- -CUCaUG---ACCGGCG-CCUAG-------------UACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 131161 | 0.69 | 0.781887 |
Target: 5'- cGAG-GCcGGCCGCGG-UCGcGGuCGCg -3' miRNA: 3'- -CUCaUGaCCGGCGCCuAGUaCCuGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 131918 | 0.7 | 0.72377 |
Target: 5'- aGAGcacCUGG-CGCGGAUCGUGcGcCGCg -3' miRNA: 3'- -CUCau-GACCgGCGCCUAGUAC-CuGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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