Results 61 - 80 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25521 | 3' | -55.6 | NC_005337.1 | + | 52976 | 0.77 | 0.341751 |
Target: 5'- aAGUGCUGGaCCGCGaGAUCA-GG-CGCg -3' miRNA: 3'- cUCAUGACC-GGCGC-CUAGUaCCuGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 52368 | 0.74 | 0.500126 |
Target: 5'- cGGGgccGCUgacGGCUGCGGGgcCGUGGACGCc -3' miRNA: 3'- -CUCa--UGA---CCGGCGCCUa-GUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 52113 | 0.73 | 0.559883 |
Target: 5'- aGGUGCgcgacgGGCCGgccaUGGccuUCGUGGACGCg -3' miRNA: 3'- cUCAUGa-----CCGGC----GCCu--AGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 48352 | 0.69 | 0.781887 |
Target: 5'- cGGUGaaccaGGCCGCGG-UgGUGGACGa -3' miRNA: 3'- cUCAUga---CCGGCGCCuAgUACCUGCg -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 48305 | 0.66 | 0.914137 |
Target: 5'- gGAGUACcuccagcggGGCaCGgGGAUgugCGUGGACuGCu -3' miRNA: 3'- -CUCAUGa--------CCG-GCgCCUA---GUACCUG-CG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 48170 | 0.66 | 0.88155 |
Target: 5'- cGAGUGCUGGgaCC-CGGAgugCGUcuccggGGACGUg -3' miRNA: 3'- -CUCAUGACC--GGcGCCUa--GUA------CCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 47331 | 0.73 | 0.529696 |
Target: 5'- ------aGGCgCGCGuGGUCAUGGACGCc -3' miRNA: 3'- cucaugaCCG-GCGC-CUAGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 45324 | 0.66 | 0.88155 |
Target: 5'- gGGGUGCccaCCaagaccagGCGGAUCAUgGGGCGCg -3' miRNA: 3'- -CUCAUGaccGG--------CGCCUAGUA-CCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 45187 | 0.68 | 0.818019 |
Target: 5'- ---gGCUGGCCGUGc--CcgGGGCGCu -3' miRNA: 3'- cucaUGACCGGCGCcuaGuaCCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 43935 | 0.69 | 0.752348 |
Target: 5'- ---cGCUGGCCGCugcucgugaccacGGAcCA-GGACGCa -3' miRNA: 3'- cucaUGACCGGCG-------------CCUaGUaCCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 40539 | 0.7 | 0.72377 |
Target: 5'- gGAGgcUUGcGCCgGCGGGUCGcUGGAgGCc -3' miRNA: 3'- -CUCauGAC-CGG-CGCCUAGU-ACCUgCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 38797 | 0.67 | 0.835087 |
Target: 5'- cGAGUgcauggACUGGCUGCgcacGGggCGcuacgccgcgcUGGACGCg -3' miRNA: 3'- -CUCA------UGACCGGCG----CCuaGU-----------ACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 37683 | 0.66 | 0.88155 |
Target: 5'- aGAGUuCgagGGCgGCGGcGUCcaGGACGCc -3' miRNA: 3'- -CUCAuGa--CCGgCGCC-UAGuaCCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 35770 | 0.66 | 0.888536 |
Target: 5'- -cGgcCUuGCCGCGGAacUCggGGACGUc -3' miRNA: 3'- cuCauGAcCGGCGCCU--AGuaCCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 35757 | 0.7 | 0.72377 |
Target: 5'- ---cGCUGGgCGCgaccgGGAUCGUGG-CGCg -3' miRNA: 3'- cucaUGACCgGCG-----CCUAGUACCuGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 29129 | 0.67 | 0.874339 |
Target: 5'- aGGUGCggcgauGCCGCGGAUCGU--AUGCu -3' miRNA: 3'- cUCAUGac----CGGCGCCUAGUAccUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 27445 | 0.66 | 0.895291 |
Target: 5'- cAGUACgUGGUgGCGGGgacgGGACGg -3' miRNA: 3'- cUCAUG-ACCGgCGCCUaguaCCUGCg -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 21402 | 0.67 | 0.843342 |
Target: 5'- ---gGC-GGCCGCGGcAUCGUcGACGUg -3' miRNA: 3'- cucaUGaCCGGCGCC-UAGUAcCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 17920 | 0.67 | 0.866907 |
Target: 5'- aAGUugaGGaCGCGGGUCAUGGcccgGCGCu -3' miRNA: 3'- cUCAugaCCgGCGCCUAGUACC----UGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 13232 | 0.66 | 0.901811 |
Target: 5'- uGGUACcGGCCcaccGCGGAccgCA-GGAUGCc -3' miRNA: 3'- cUCAUGaCCGG----CGCCUa--GUaCCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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