Results 61 - 80 of 83 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25521 | 3' | -55.6 | NC_005337.1 | + | 59071 | 0.68 | 0.818019 |
Target: 5'- cGGGUgGCUGGCgcuggucuCGCGGccCGcGGACGCg -3' miRNA: 3'- -CUCA-UGACCG--------GCGCCuaGUaCCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 105442 | 0.68 | 0.817147 |
Target: 5'- gGAGUacauGCUGGCCGCcaucuucuuccggGuGGUCGUGcugcGGCGCa -3' miRNA: 3'- -CUCA----UGACCGGCG-------------C-CUAGUAC----CUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 102940 | 0.68 | 0.812762 |
Target: 5'- uGGUGCUGGugcagugcgagaacaCCGUGG-UCGUGGggauGCGCu -3' miRNA: 3'- cUCAUGACC---------------GGCGCCuAGUACC----UGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 115030 | 0.81 | 0.193842 |
Target: 5'- -cGUGCUGGCCaagcucaucagacucGCGGA-CGUGGACGCc -3' miRNA: 3'- cuCAUGACCGG---------------CGCCUaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 103887 | 0.77 | 0.326537 |
Target: 5'- cAGcUGCUGGCCGCGcgcGA-CAUGGACGUg -3' miRNA: 3'- cUC-AUGACCGGCGC---CUaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 52976 | 0.77 | 0.341751 |
Target: 5'- aAGUGCUGGaCCGCGaGAUCA-GG-CGCg -3' miRNA: 3'- cUCAUGACC-GGCGC-CUAGUaCCuGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 88077 | 0.75 | 0.43425 |
Target: 5'- cGAGcucaUGCaGGCCGUGGAcaUgGUGGACGCc -3' miRNA: 3'- -CUC----AUGaCCGGCGCCU--AgUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 85399 | 0.74 | 0.461891 |
Target: 5'- uGGU-CUGGCCGcCGGG-CggGGACGCg -3' miRNA: 3'- cUCAuGACCGGC-GCCUaGuaCCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 109007 | 0.74 | 0.49043 |
Target: 5'- cGAGgag-GGCuCGCGGAaCGUGGGCGUg -3' miRNA: 3'- -CUCaugaCCG-GCGCCUaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 52368 | 0.74 | 0.500126 |
Target: 5'- cGGGgccGCUgacGGCUGCGGGgcCGUGGACGCc -3' miRNA: 3'- -CUCa--UGA---CCGGCGCCUa-GUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 130734 | 0.73 | 0.5287 |
Target: 5'- cGAGcGCucgUGGCCGCuGGGUCcgacgugugcaccGUGGACGCc -3' miRNA: 3'- -CUCaUG---ACCGGCG-CCUAG-------------UACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 80167 | 0.72 | 0.570056 |
Target: 5'- uGGUACgGGCCGUgccGGcgCGcGGACGCg -3' miRNA: 3'- cUCAUGaCCGGCG---CCuaGUaCCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 133560 | 0.71 | 0.67304 |
Target: 5'- -cGUACcccgcGGCCGCGGG-CGUGcGCGCg -3' miRNA: 3'- cuCAUGa----CCGGCGCCUaGUACcUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 35757 | 0.7 | 0.72377 |
Target: 5'- ---cGCUGGgCGCgaccgGGAUCGUGG-CGCg -3' miRNA: 3'- cucaUGACCgGCG-----CCUAGUACCuGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 53255 | 0.7 | 0.72377 |
Target: 5'- cAGaUAC-GGcCCGUGGA-CGUGGACGCc -3' miRNA: 3'- cUC-AUGaCC-GGCGCCUaGUACCUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 40539 | 0.7 | 0.72377 |
Target: 5'- gGAGgcUUGcGCCgGCGGGUCGcUGGAgGCc -3' miRNA: 3'- -CUCauGAC-CGG-CGCCUAGU-ACCUgCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 130643 | 0.69 | 0.743566 |
Target: 5'- ---aGCUGGgCGCGGA-CGUGcGCGCg -3' miRNA: 3'- cucaUGACCgGCGCCUaGUACcUGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 58219 | 0.69 | 0.772489 |
Target: 5'- -cGUACc-GCCGCGcggcGGUCAUGGAgCGCa -3' miRNA: 3'- cuCAUGacCGGCGC----CUAGUACCU-GCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 131161 | 0.69 | 0.781887 |
Target: 5'- cGAG-GCcGGCCGCGG-UCGcGGuCGCg -3' miRNA: 3'- -CUCaUGaCCGGCGCCuAGUaCCuGCG- -5' |
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25521 | 3' | -55.6 | NC_005337.1 | + | 112859 | 0.68 | 0.809223 |
Target: 5'- ---aGCUGGCCGCGGcccacGUCGacGAUGCc -3' miRNA: 3'- cucaUGACCGGCGCC-----UAGUacCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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