miRNA display CGI


Results 41 - 60 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25521 3' -55.6 NC_005337.1 + 95452 0.66 0.901811
Target:  5'- --cUACcGGCCGUucGGAgaacUCGUGGAuCGCg -3'
miRNA:   3'- cucAUGaCCGGCG--CCU----AGUACCU-GCG- -5'
25521 3' -55.6 NC_005337.1 + 63526 0.67 0.843342
Target:  5'- -cGUGCaGGCCuCGGG-CGUGcGGCGCu -3'
miRNA:   3'- cuCAUGaCCGGcGCCUaGUAC-CUGCG- -5'
25521 3' -55.6 NC_005337.1 + 17920 0.67 0.866907
Target:  5'- aAGUugaGGaCGCGGGUCAUGGcccgGCGCu -3'
miRNA:   3'- cUCAugaCCgGCGCCUAGUACC----UGCG- -5'
25521 3' -55.6 NC_005337.1 + 90381 0.73 0.529696
Target:  5'- uGAG-ACUGGCCGUGGuaCGUGuGCGCg -3'
miRNA:   3'- -CUCaUGACCGGCGCCuaGUACcUGCG- -5'
25521 3' -55.6 NC_005337.1 + 130637 0.73 0.509905
Target:  5'- ---gACgaGGCCGCGGcgC-UGGACGCa -3'
miRNA:   3'- cucaUGa-CCGGCGCCuaGuACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 65989 0.67 0.843342
Target:  5'- uGGUGCgaGGCCGUGcGUCccGUGGGCGa -3'
miRNA:   3'- cUCAUGa-CCGGCGCcUAG--UACCUGCg -5'
25521 3' -55.6 NC_005337.1 + 21402 0.67 0.843342
Target:  5'- ---gGC-GGCCGCGGcAUCGUcGACGUg -3'
miRNA:   3'- cucaUGaCCGGCGCC-UAGUAcCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 66865 0.79 0.258066
Target:  5'- aAGUGCUGGCCGUGGAcuUCGgcaacGGCGCg -3'
miRNA:   3'- cUCAUGACCGGCGCCU--AGUac---CUGCG- -5'
25521 3' -55.6 NC_005337.1 + 77382 0.67 0.862343
Target:  5'- cGGUGCcgcaacaccagccgGcGCCGCGGGagGUGGAUGUg -3'
miRNA:   3'- cUCAUGa-------------C-CGGCGCCUagUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 103197 0.68 0.818019
Target:  5'- ---cGCUGaaccCCGC-GAUCGUGGACGCc -3'
miRNA:   3'- cucaUGACc---GGCGcCUAGUACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 130068 0.68 0.818019
Target:  5'- -cGUugUGGCCGCG--UCGcuGACGCa -3'
miRNA:   3'- cuCAugACCGGCGCcuAGUacCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 133560 0.71 0.67304
Target:  5'- -cGUACcccgcGGCCGCGGG-CGUGcGCGCg -3'
miRNA:   3'- cuCAUGa----CCGGCGCCUaGUACcUGCG- -5'
25521 3' -55.6 NC_005337.1 + 96833 0.66 0.908095
Target:  5'- cGGGUGCgcaGCCGCGG--CGUGG-CGUu -3'
miRNA:   3'- -CUCAUGac-CGGCGCCuaGUACCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 68117 0.68 0.818019
Target:  5'- -cGUACUcggGGUCGCGGggCcgGUGGcCGCg -3'
miRNA:   3'- cuCAUGA---CCGGCGCCuaG--UACCuGCG- -5'
25521 3' -55.6 NC_005337.1 + 45187 0.68 0.818019
Target:  5'- ---gGCUGGCCGUGc--CcgGGGCGCu -3'
miRNA:   3'- cucaUGACCGGCGCcuaGuaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 56039 0.68 0.818019
Target:  5'- -cGUGCagGGCgUGCGGuUCGUGGAcaCGCu -3'
miRNA:   3'- cuCAUGa-CCG-GCGCCuAGUACCU--GCG- -5'
25521 3' -55.6 NC_005337.1 + 43935 0.69 0.752348
Target:  5'- ---cGCUGGCCGCugcucgugaccacGGAcCA-GGACGCa -3'
miRNA:   3'- cucaUGACCGGCG-------------CCUaGUaCCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 59019 0.69 0.743566
Target:  5'- -cGUGC-GGUCGUGGcgCccgcugGUGGACGCg -3'
miRNA:   3'- cuCAUGaCCGGCGCCuaG------UACCUGCG- -5'
25521 3' -55.6 NC_005337.1 + 71356 0.7 0.72377
Target:  5'- cGAGUACaGcGCCGUcaaGGA-CAUGGACGa -3'
miRNA:   3'- -CUCAUGaC-CGGCG---CCUaGUACCUGCg -5'
25521 3' -55.6 NC_005337.1 + 131918 0.7 0.72377
Target:  5'- aGAGcacCUGG-CGCGGAUCGUGcGcCGCg -3'
miRNA:   3'- -CUCau-GACCgGCGCCUAGUAC-CuGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.