miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25523 5' -54.6 NC_005337.1 + 126217 0.66 0.934616
Target:  5'- cGCGgUCGCgGAGGAG-GCcCGugUCc -3'
miRNA:   3'- -UGUgAGCGgCUCUUCaCGaGCugAGa -5'
25523 5' -54.6 NC_005337.1 + 65131 0.66 0.92996
Target:  5'- cGCACUgGCCGcGAAG-GCggccgccguggaccgCGGCUCg -3'
miRNA:   3'- -UGUGAgCGGCuCUUCaCGa--------------GCUGAGa -5'
25523 5' -54.6 NC_005337.1 + 37044 0.66 0.929431
Target:  5'- -aACUCGUCGuuggcGAAGUGC-CGGCUg- -3'
miRNA:   3'- ugUGAGCGGCu----CUUCACGaGCUGAga -5'
25523 5' -54.6 NC_005337.1 + 47064 0.66 0.929431
Target:  5'- gGCGCUaCGagGAGAAGUGCUgCGGC-Cg -3'
miRNA:   3'- -UGUGA-GCggCUCUUCACGA-GCUGaGa -5'
25523 5' -54.6 NC_005337.1 + 37981 0.66 0.929431
Target:  5'- gGCGCUgGCCGAcgugucGAAGcGCUUGAC-Ca -3'
miRNA:   3'- -UGUGAgCGGCU------CUUCaCGAGCUGaGa -5'
25523 5' -54.6 NC_005337.1 + 98900 0.67 0.893126
Target:  5'- cGCGCUCGagcCCGGGGAGUacacggugaGC-CGGCUCc -3'
miRNA:   3'- -UGUGAGC---GGCUCUUCA---------CGaGCUGAGa -5'
25523 5' -54.6 NC_005337.1 + 54511 0.68 0.840108
Target:  5'- gACGuC-CGgCGAGGAGcUGUUCGACUCg -3'
miRNA:   3'- -UGU-GaGCgGCUCUUC-ACGAGCUGAGa -5'
25523 5' -54.6 NC_005337.1 + 61609 0.68 0.840108
Target:  5'- aGCGCUgGCugugCGAGAAGUaGCUguaCGGCUCg -3'
miRNA:   3'- -UGUGAgCG----GCUCUUCA-CGA---GCUGAGa -5'
25523 5' -54.6 NC_005337.1 + 5690 0.69 0.814304
Target:  5'- cGCGCccaCGUCGAuGAAGUGCUUGAC-Cg -3'
miRNA:   3'- -UGUGa--GCGGCU-CUUCACGAGCUGaGa -5'
25523 5' -54.6 NC_005337.1 + 124108 0.69 0.786954
Target:  5'- cGCGCUCGCCGGcAAGgGCUgGACg-- -3'
miRNA:   3'- -UGUGAGCGGCUcUUCaCGAgCUGaga -5'
25523 5' -54.6 NC_005337.1 + 3814 0.7 0.759273
Target:  5'- gUACUCGCgGAGGAGgcuggacaugaaccgGCUCGACa-- -3'
miRNA:   3'- uGUGAGCGgCUCUUCa--------------CGAGCUGaga -5'
25523 5' -54.6 NC_005337.1 + 100022 0.7 0.738601
Target:  5'- gGCGCggaccgUGCUG-GAGGUGCUCGACg-- -3'
miRNA:   3'- -UGUGa-----GCGGCuCUUCACGAGCUGaga -5'
25523 5' -54.6 NC_005337.1 + 81358 0.71 0.698123
Target:  5'- -aACUCGCCGAGGAuccGUGCgcgguUCGGCUg- -3'
miRNA:   3'- ugUGAGCGGCUCUU---CACG-----AGCUGAga -5'
25523 5' -54.6 NC_005337.1 + 115638 0.71 0.697097
Target:  5'- gGCGCggccgccaUCGCCGAGGAGUGUgcgaagaaagcccUCGGCUa- -3'
miRNA:   3'- -UGUG--------AGCGGCUCUUCACG-------------AGCUGAga -5'
25523 5' -54.6 NC_005337.1 + 108998 0.72 0.646298
Target:  5'- gACGCUgGCCGAGGAGgGCUCG-Cg-- -3'
miRNA:   3'- -UGUGAgCGGCUCUUCaCGAGCuGaga -5'
25523 5' -54.6 NC_005337.1 + 124334 0.72 0.625423
Target:  5'- aACGCcgUUGCCGAGA--UGCUCGACUg- -3'
miRNA:   3'- -UGUG--AGCGGCUCUucACGAGCUGAga -5'
25523 5' -54.6 NC_005337.1 + 120764 1.07 0.00459
Target:  5'- aACACUCGCCGAGAAGUGCUCGACUCUc -3'
miRNA:   3'- -UGUGAGCGGCUCUUCACGAGCUGAGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.