Results 1 - 17 of 17 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25523 | 5' | -54.6 | NC_005337.1 | + | 120764 | 1.07 | 0.00459 |
Target: 5'- aACACUCGCCGAGAAGUGCUCGACUCUc -3' miRNA: 3'- -UGUGAGCGGCUCUUCACGAGCUGAGA- -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 124334 | 0.72 | 0.625423 |
Target: 5'- aACGCcgUUGCCGAGA--UGCUCGACUg- -3' miRNA: 3'- -UGUG--AGCGGCUCUucACGAGCUGAga -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 108998 | 0.72 | 0.646298 |
Target: 5'- gACGCUgGCCGAGGAGgGCUCG-Cg-- -3' miRNA: 3'- -UGUGAgCGGCUCUUCaCGAGCuGaga -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 115638 | 0.71 | 0.697097 |
Target: 5'- gGCGCggccgccaUCGCCGAGGAGUGUgcgaagaaagcccUCGGCUa- -3' miRNA: 3'- -UGUG--------AGCGGCUCUUCACG-------------AGCUGAga -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 81358 | 0.71 | 0.698123 |
Target: 5'- -aACUCGCCGAGGAuccGUGCgcgguUCGGCUg- -3' miRNA: 3'- ugUGAGCGGCUCUU---CACG-----AGCUGAga -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 100022 | 0.7 | 0.738601 |
Target: 5'- gGCGCggaccgUGCUG-GAGGUGCUCGACg-- -3' miRNA: 3'- -UGUGa-----GCGGCuCUUCACGAGCUGaga -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 3814 | 0.7 | 0.759273 |
Target: 5'- gUACUCGCgGAGGAGgcuggacaugaaccgGCUCGACa-- -3' miRNA: 3'- uGUGAGCGgCUCUUCa--------------CGAGCUGaga -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 124108 | 0.69 | 0.786954 |
Target: 5'- cGCGCUCGCCGGcAAGgGCUgGACg-- -3' miRNA: 3'- -UGUGAGCGGCUcUUCaCGAgCUGaga -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 5690 | 0.69 | 0.814304 |
Target: 5'- cGCGCccaCGUCGAuGAAGUGCUUGAC-Cg -3' miRNA: 3'- -UGUGa--GCGGCU-CUUCACGAGCUGaGa -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 54511 | 0.68 | 0.840108 |
Target: 5'- gACGuC-CGgCGAGGAGcUGUUCGACUCg -3' miRNA: 3'- -UGU-GaGCgGCUCUUC-ACGAGCUGAGa -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 61609 | 0.68 | 0.840108 |
Target: 5'- aGCGCUgGCugugCGAGAAGUaGCUguaCGGCUCg -3' miRNA: 3'- -UGUGAgCG----GCUCUUCA-CGA---GCUGAGa -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 98900 | 0.67 | 0.893126 |
Target: 5'- cGCGCUCGagcCCGGGGAGUacacggugaGC-CGGCUCc -3' miRNA: 3'- -UGUGAGC---GGCUCUUCA---------CGaGCUGAGa -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 37044 | 0.66 | 0.929431 |
Target: 5'- -aACUCGUCGuuggcGAAGUGC-CGGCUg- -3' miRNA: 3'- ugUGAGCGGCu----CUUCACGaGCUGAga -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 47064 | 0.66 | 0.929431 |
Target: 5'- gGCGCUaCGagGAGAAGUGCUgCGGC-Cg -3' miRNA: 3'- -UGUGA-GCggCUCUUCACGA-GCUGaGa -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 37981 | 0.66 | 0.929431 |
Target: 5'- gGCGCUgGCCGAcgugucGAAGcGCUUGAC-Ca -3' miRNA: 3'- -UGUGAgCGGCU------CUUCaCGAGCUGaGa -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 65131 | 0.66 | 0.92996 |
Target: 5'- cGCACUgGCCGcGAAG-GCggccgccguggaccgCGGCUCg -3' miRNA: 3'- -UGUGAgCGGCuCUUCaCGa--------------GCUGAGa -5' |
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25523 | 5' | -54.6 | NC_005337.1 | + | 126217 | 0.66 | 0.934616 |
Target: 5'- cGCGgUCGCgGAGGAG-GCcCGugUCc -3' miRNA: 3'- -UGUgAGCGgCUCUUCaCGaGCugAGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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