miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25524 3' -55.4 NC_005337.1 + 73865 0.67 0.885091
Target:  5'- aGGagaAGGGCGGGC-UCAUGGccacggacaUCGAGGu -3'
miRNA:   3'- -CCg--UUCUGCCCGcAGUGCU---------AGCUCCu -5'
25524 3' -55.4 NC_005337.1 + 94689 0.67 0.878069
Target:  5'- aGGCGGGGCGcaauacucGGCGUCcACGAggaCGAGu- -3'
miRNA:   3'- -CCGUUCUGC--------CCGCAG-UGCUa--GCUCcu -5'
25524 3' -55.4 NC_005337.1 + 65425 0.67 0.870827
Target:  5'- cGCGGGGCugguGGCGUCGCG---GAGGAg -3'
miRNA:   3'- cCGUUCUGc---CCGCAGUGCuagCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 24204 0.67 0.870827
Target:  5'- cGGCGAGGCGcGCGUCGaGGUgGAGc- -3'
miRNA:   3'- -CCGUUCUGCcCGCAGUgCUAgCUCcu -5'
25524 3' -55.4 NC_005337.1 + 114910 0.67 0.870827
Target:  5'- -uCGAGcAgGGGCaGUgCAUGAUCGGGGAg -3'
miRNA:   3'- ccGUUC-UgCCCG-CA-GUGCUAGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 97843 0.68 0.863372
Target:  5'- cGCAgcugcAGcCGGGUGagGCGcgCGAGGAc -3'
miRNA:   3'- cCGU-----UCuGCCCGCagUGCuaGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 11320 0.68 0.855709
Target:  5'- uGGUGuuguuGGCGGcGuCGUCGCGGcCGGGGAu -3'
miRNA:   3'- -CCGUu----CUGCC-C-GCAGUGCUaGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 1044 0.68 0.855709
Target:  5'- cGgGAGGCGGGCGgCGgGAggccggCGGGGGc -3'
miRNA:   3'- cCgUUCUGCCCGCaGUgCUa-----GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 1044 0.68 0.855709
Target:  5'- cGgGAGGCGGGCGgCGgGAggccggCGGGGGc -3'
miRNA:   3'- cCgUUCUGCCCGCaGUgCUa-----GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 16650 0.68 0.847844
Target:  5'- cGGCGGuGACGcGGCGgC-CGGUCGAGa- -3'
miRNA:   3'- -CCGUU-CUGC-CCGCaGuGCUAGCUCcu -5'
25524 3' -55.4 NC_005337.1 + 13658 0.68 0.847844
Target:  5'- cGCGGGAUGGGCaugaagaaGUCuACGAagaacaCGAGGAg -3'
miRNA:   3'- cCGUUCUGCCCG--------CAG-UGCUa-----GCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 93273 0.68 0.847844
Target:  5'- uGGCGAGGCcgggGGuGCGUCggcgccuggugGCGGUCGAGc- -3'
miRNA:   3'- -CCGUUCUG----CC-CGCAG-----------UGCUAGCUCcu -5'
25524 3' -55.4 NC_005337.1 + 88263 0.68 0.839783
Target:  5'- cGGCGcgccGGCGGGCGcCGCG---GAGGAc -3'
miRNA:   3'- -CCGUu---CUGCCCGCaGUGCuagCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 127928 0.69 0.814501
Target:  5'- gGGCAAGuacGCGGacGCGgugCGCGAgugCGAGGc -3'
miRNA:   3'- -CCGUUC---UGCC--CGCa--GUGCUa--GCUCCu -5'
25524 3' -55.4 NC_005337.1 + 65555 0.69 0.813631
Target:  5'- cGCAGcACGGGCGUCucggccaugcuaGCGGUCGuccaaacAGGAc -3'
miRNA:   3'- cCGUUcUGCCCGCAG------------UGCUAGC-------UCCU- -5'
25524 3' -55.4 NC_005337.1 + 51122 0.69 0.787732
Target:  5'- cGGCGGGA-GGGCGagAUGAUCGccGAc -3'
miRNA:   3'- -CCGUUCUgCCCGCagUGCUAGCucCU- -5'
25524 3' -55.4 NC_005337.1 + 84101 0.69 0.778518
Target:  5'- cGGCcguccGGACGGGCGaaGCaGUCgGAGGAg -3'
miRNA:   3'- -CCGu----UCUGCCCGCagUGcUAG-CUCCU- -5'
25524 3' -55.4 NC_005337.1 + 101255 0.69 0.778518
Target:  5'- cGCuGGACGGcGCGgacgcgaagaUCGCGGccaUCGAGGAc -3'
miRNA:   3'- cCGuUCUGCC-CGC----------AGUGCU---AGCUCCU- -5'
25524 3' -55.4 NC_005337.1 + 38245 0.7 0.759706
Target:  5'- aGUAGGGCGGGCGcggaucauuUCGCGA-CG-GGAu -3'
miRNA:   3'- cCGUUCUGCCCGC---------AGUGCUaGCuCCU- -5'
25524 3' -55.4 NC_005337.1 + 84030 0.7 0.730665
Target:  5'- cGGCGGGACacaccGGCGgaggcgcgCACGAcgcccUCGGGGAg -3'
miRNA:   3'- -CCGUUCUGc----CCGCa-------GUGCU-----AGCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.