miRNA display CGI


Results 21 - 40 of 187 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25525 3' -56.3 NC_005337.1 + 132247 0.66 0.878031
Target:  5'- cGGAUCGcCGUGGcCAaaGAGCUG-GGCa -3'
miRNA:   3'- aCCUAGC-GCGCCuGUg-CUCGAUgCUG- -5'
25525 3' -56.3 NC_005337.1 + 89035 0.66 0.870757
Target:  5'- cGGAaCGCGCauGCGCGcGCUGCuGACc -3'
miRNA:   3'- aCCUaGCGCGccUGUGCuCGAUG-CUG- -5'
25525 3' -56.3 NC_005337.1 + 51914 0.66 0.870757
Target:  5'- cGGuGUCGCGgccgaccuuCGG-CACGGGCaucgGCGGCa -3'
miRNA:   3'- aCC-UAGCGC---------GCCuGUGCUCGa---UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 121789 0.66 0.870757
Target:  5'- cUGGA-CGCcgguGCGGACGCGGaggcGCUG-GACg -3'
miRNA:   3'- -ACCUaGCG----CGCCUGUGCU----CGAUgCUG- -5'
25525 3' -56.3 NC_005337.1 + 104020 0.66 0.868533
Target:  5'- cUGGAgcagggcgacgccaUCGCGCGGAacgucuccuCGCGcacGCUcgACGACg -3'
miRNA:   3'- -ACCU--------------AGCGCGCCU---------GUGCu--CGA--UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 64222 0.66 0.863268
Target:  5'- cGGucCGCGaCGGGCagcgccucuuuGCGGcGCUGCGGCg -3'
miRNA:   3'- aCCuaGCGC-GCCUG-----------UGCU-CGAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 128435 0.66 0.863268
Target:  5'- gGGGUCccCGCGGGCGgcCGGG-UACGACc -3'
miRNA:   3'- aCCUAGc-GCGCCUGU--GCUCgAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 38522 0.66 0.863268
Target:  5'- cGcGAUCGCGgGGAU-CGuGC-ACGGCg -3'
miRNA:   3'- aC-CUAGCGCgCCUGuGCuCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 97009 0.66 0.863268
Target:  5'- gGGGUC-CGCGGAcCugGAcaaccgcaaCUGCGACg -3'
miRNA:   3'- aCCUAGcGCGCCU-GugCUc--------GAUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 33597 0.66 0.863268
Target:  5'- cGGccgCGCGCGcGGCGCGAac-GCGGCg -3'
miRNA:   3'- aCCua-GCGCGC-CUGUGCUcgaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 130172 0.66 0.863268
Target:  5'- cGGAggccgugCGCGCGGAgCACgcgGAGCUcauccuggaguGCGAg -3'
miRNA:   3'- aCCUa------GCGCGCCU-GUG---CUCGA-----------UGCUg -5'
25525 3' -56.3 NC_005337.1 + 125510 0.66 0.863268
Target:  5'- gUGGAggUCGUGCGGcuGCuCGuGCggUACGGCg -3'
miRNA:   3'- -ACCU--AGCGCGCC--UGuGCuCG--AUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 75168 0.66 0.86098
Target:  5'- cGGAccgcccucgucgccUCGCGCGcGucCGCGGGCcGCGAg -3'
miRNA:   3'- aCCU--------------AGCGCGC-Cu-GUGCUCGaUGCUg -5'
25525 3' -56.3 NC_005337.1 + 119724 0.66 0.855569
Target:  5'- cGGAUCGCacgaggaacucGCGGACAUggugcgccaGAGCacGCGAg -3'
miRNA:   3'- aCCUAGCG-----------CGCCUGUG---------CUCGa-UGCUg -5'
25525 3' -56.3 NC_005337.1 + 50670 0.66 0.855569
Target:  5'- gUGGAUCGCGUGGAUaACGccAGCUcCu-- -3'
miRNA:   3'- -ACCUAGCGCGCCUG-UGC--UCGAuGcug -5'
25525 3' -56.3 NC_005337.1 + 104478 0.66 0.855569
Target:  5'- cGGAgCaCGCGGAgCACGcGCaGCGGCg -3'
miRNA:   3'- aCCUaGcGCGCCU-GUGCuCGaUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 8361 0.66 0.855569
Target:  5'- cUGcGAg-GCGCGG-CACGAGCUcccaAUGGCc -3'
miRNA:   3'- -AC-CUagCGCGCCuGUGCUCGA----UGCUG- -5'
25525 3' -56.3 NC_005337.1 + 99459 0.66 0.854788
Target:  5'- gUGGAcgCGCGCGuGCGCGAgggcgucuucgugGCcgUGCGGCg -3'
miRNA:   3'- -ACCUa-GCGCGCcUGUGCU-------------CG--AUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 35886 0.66 0.854788
Target:  5'- gGGAcgugUGCGCGGACgcguacGCGAGCguguuuuUAUGAUa -3'
miRNA:   3'- aCCUa---GCGCGCCUG------UGCUCG-------AUGCUG- -5'
25525 3' -56.3 NC_005337.1 + 75400 0.66 0.853219
Target:  5'- uUGGc-CGCGCGGaugcugcggacggcGCGCGAGCgcGCGAa -3'
miRNA:   3'- -ACCuaGCGCGCC--------------UGUGCUCGa-UGCUg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.