miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25525 5' -61 NC_005337.1 + 97279 0.66 0.679402
Target:  5'- gUCcCCGCGgcUGGaGaC-CGCGGAGAUCa -3'
miRNA:   3'- -AGcGGCGCaaGCC-C-GcGCGCCUCUAG- -5'
25525 5' -61 NC_005337.1 + 122054 0.66 0.669544
Target:  5'- gUGCCGCGUcgUGGaGaCGCugcccGCGGAGGUg -3'
miRNA:   3'- aGCGGCGCAa-GCC-C-GCG-----CGCCUCUAg -5'
25525 5' -61 NC_005337.1 + 38606 0.66 0.669544
Target:  5'- gCGCaGCGU--GGGCGUGCuGGGGAa- -3'
miRNA:   3'- aGCGgCGCAagCCCGCGCG-CCUCUag -5'
25525 5' -61 NC_005337.1 + 60264 0.66 0.669544
Target:  5'- -aGCCGgagUCGGGgcagGCGCGGGGGUg -3'
miRNA:   3'- agCGGCgcaAGCCCg---CGCGCCUCUAg -5'
25525 5' -61 NC_005337.1 + 60009 0.66 0.659657
Target:  5'- aUGCgGCuauuuUUC-GGCGCGCGGAGAc- -3'
miRNA:   3'- aGCGgCGc----AAGcCCGCGCGCCUCUag -5'
25525 5' -61 NC_005337.1 + 109014 0.66 0.659657
Target:  5'- -gGCuCGCGgaaCGuGG-GCGUGGAGAUCc -3'
miRNA:   3'- agCG-GCGCaa-GC-CCgCGCGCCUCUAG- -5'
25525 5' -61 NC_005337.1 + 132101 0.66 0.659657
Target:  5'- gCGCCGUGcgcgUCGGcgccGUGCGCGGcAGGc- -3'
miRNA:   3'- aGCGGCGCa---AGCC----CGCGCGCC-UCUag -5'
25525 5' -61 NC_005337.1 + 124396 0.66 0.659657
Target:  5'- -gGCCGCGUUCaacGGUcuGCGCGaGAuGGUCc -3'
miRNA:   3'- agCGGCGCAAGc--CCG--CGCGC-CU-CUAG- -5'
25525 5' -61 NC_005337.1 + 131195 0.66 0.659657
Target:  5'- -gGCCGUcgcCGaGGUGCGCGGAG-UCc -3'
miRNA:   3'- agCGGCGcaaGC-CCGCGCGCCUCuAG- -5'
25525 5' -61 NC_005337.1 + 24194 0.66 0.659657
Target:  5'- gCGCCGUuaccggCGaGGCGCGCGucGAGGUg -3'
miRNA:   3'- aGCGGCGcaa---GC-CCGCGCGC--CUCUAg -5'
25525 5' -61 NC_005337.1 + 78072 0.66 0.658667
Target:  5'- aUGCCGCGcuccuugCGGuagagcuuguuccGCGCGCuGAGGUCc -3'
miRNA:   3'- aGCGGCGCaa-----GCC-------------CGCGCGcCUCUAG- -5'
25525 5' -61 NC_005337.1 + 121103 0.66 0.64975
Target:  5'- cCGCgagGCGgaCGcGGCGCccGCGGAGAUg -3'
miRNA:   3'- aGCGg--CGCaaGC-CCGCG--CGCCUCUAg -5'
25525 5' -61 NC_005337.1 + 99660 0.66 0.64975
Target:  5'- aUCGCCGCGcggcUGGGCGCGCc------ -3'
miRNA:   3'- -AGCGGCGCaa--GCCCGCGCGccucuag -5'
25525 5' -61 NC_005337.1 + 10872 0.66 0.64975
Target:  5'- cUCGCCGag--CGGGCgagcaccacguGUGCGGGGAc- -3'
miRNA:   3'- -AGCGGCgcaaGCCCG-----------CGCGCCUCUag -5'
25525 5' -61 NC_005337.1 + 19106 0.66 0.64975
Target:  5'- aCGCCgGCGUccgCGGGCGC-CGGcaucuccagguGGUCg -3'
miRNA:   3'- aGCGG-CGCAa--GCCCGCGcGCCu----------CUAG- -5'
25525 5' -61 NC_005337.1 + 90305 0.66 0.64975
Target:  5'- cUCGCCGC---CGGGCGCGCcgccGuAGAUg -3'
miRNA:   3'- -AGCGGCGcaaGCCCGCGCGc---C-UCUAg -5'
25525 5' -61 NC_005337.1 + 133041 0.66 0.648758
Target:  5'- cUCGUCGUGUaCGGGCccgaucuccgagaGCGCGu-GGUCg -3'
miRNA:   3'- -AGCGGCGCAaGCCCG-------------CGCGCcuCUAG- -5'
25525 5' -61 NC_005337.1 + 82184 0.67 0.63983
Target:  5'- cUGCaCGCGgccgcCGGGCGCGCacggccGGcGGUCg -3'
miRNA:   3'- aGCG-GCGCaa---GCCCGCGCG------CCuCUAG- -5'
25525 5' -61 NC_005337.1 + 108645 0.67 0.63983
Target:  5'- -gGCCGUGg-CGGGCgaccGCGCGGAcGAa- -3'
miRNA:   3'- agCGGCGCaaGCCCG----CGCGCCU-CUag -5'
25525 5' -61 NC_005337.1 + 122203 0.67 0.63983
Target:  5'- aUCGCCGCGggCGcGGaCGUGuCGGcGcgCa -3'
miRNA:   3'- -AGCGGCGCaaGC-CC-GCGC-GCCuCuaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.