miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25526 3' -51.5 NC_005337.1 + 77939 0.66 0.979023
Target:  5'- uCCGGGUUguucuccagcgucucGCGCAUGuACUCGUUgaucuccCGCa -3'
miRNA:   3'- uGGUUCGA---------------CGCGUACuUGAGCAA-------GCG- -5'
25526 3' -51.5 NC_005337.1 + 58165 0.66 0.978307
Target:  5'- cGCgCAAGCgcgUGCGCAUGAugUaCGUggacaugacCGCc -3'
miRNA:   3'- -UG-GUUCG---ACGCGUACUugA-GCAa--------GCG- -5'
25526 3' -51.5 NC_005337.1 + 42746 0.66 0.978307
Target:  5'- cGCCGAGCgugcgGUGCggGucccGCgCGUUCGUg -3'
miRNA:   3'- -UGGUUCGa----CGCGuaCu---UGaGCAAGCG- -5'
25526 3' -51.5 NC_005337.1 + 53024 0.66 0.978307
Target:  5'- aACCugcGGCUGUGCggGAGCUgcCGg-CGCa -3'
miRNA:   3'- -UGGu--UCGACGCGuaCUUGA--GCaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 58814 0.66 0.978307
Target:  5'- gGCCucGCUGCGCcaGAucgUCGggCGCg -3'
miRNA:   3'- -UGGuuCGACGCGuaCUug-AGCaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 109899 0.66 0.978307
Target:  5'- cGCCAcG-UGCGCGUGGAagaCGUgUCGCg -3'
miRNA:   3'- -UGGUuCgACGCGUACUUga-GCA-AGCG- -5'
25526 3' -51.5 NC_005337.1 + 24839 0.66 0.975791
Target:  5'- uGCuCGAGCgGCGCGU--GCUCGaggacguggUCGCg -3'
miRNA:   3'- -UG-GUUCGaCGCGUAcuUGAGCa--------AGCG- -5'
25526 3' -51.5 NC_005337.1 + 25270 0.66 0.975791
Target:  5'- cGCCAAcGCgGCGC-UGGAgUUCGcgCGCa -3'
miRNA:   3'- -UGGUU-CGaCGCGuACUU-GAGCaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 101479 0.66 0.975791
Target:  5'- gACCAGGCgcagGCGCu---GCUCGcgcucaugCGCg -3'
miRNA:   3'- -UGGUUCGa---CGCGuacuUGAGCaa------GCG- -5'
25526 3' -51.5 NC_005337.1 + 6824 0.66 0.975791
Target:  5'- -aCGAGCgUGCGCAUGAuggauucCUUGgccCGCg -3'
miRNA:   3'- ugGUUCG-ACGCGUACUu------GAGCaa-GCG- -5'
25526 3' -51.5 NC_005337.1 + 100073 0.67 0.973068
Target:  5'- gGCCAAGCUGgacuggaGCAaGGACUgGgagaagCGCg -3'
miRNA:   3'- -UGGUUCGACg------CGUaCUUGAgCaa----GCG- -5'
25526 3' -51.5 NC_005337.1 + 127913 0.67 0.973068
Target:  5'- gGCCGAGCcgGUGC-UGGGCaaGUaCGCg -3'
miRNA:   3'- -UGGUUCGa-CGCGuACUUGagCAaGCG- -5'
25526 3' -51.5 NC_005337.1 + 85875 0.67 0.972784
Target:  5'- cGCCGAGCgucuccgUGCGCG---GCUCGaaggCGCg -3'
miRNA:   3'- -UGGUUCG-------ACGCGUacuUGAGCaa--GCG- -5'
25526 3' -51.5 NC_005337.1 + 11521 0.67 0.970129
Target:  5'- cGCCGGGCaGCGCA-GggUggccgccaggUCGUcCGCg -3'
miRNA:   3'- -UGGUUCGaCGCGUaCuuG----------AGCAaGCG- -5'
25526 3' -51.5 NC_005337.1 + 5514 0.67 0.970129
Target:  5'- uACCAGGUUcGCGCGccggcgGAGCUCuGUcacgCGCu -3'
miRNA:   3'- -UGGUUCGA-CGCGUa-----CUUGAG-CAa---GCG- -5'
25526 3' -51.5 NC_005337.1 + 3872 0.67 0.970129
Target:  5'- cACC-GGCcGCGCAUGAGCgucuugaGgaCGCg -3'
miRNA:   3'- -UGGuUCGaCGCGUACUUGag-----CaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 70252 0.67 0.970129
Target:  5'- gGCCAu-CUGCGCGUuGGACUCGc-UGCc -3'
miRNA:   3'- -UGGUucGACGCGUA-CUUGAGCaaGCG- -5'
25526 3' -51.5 NC_005337.1 + 3189 0.67 0.970129
Target:  5'- gGCC-AGC-GCGCAgaccacGAACUCGcgcucgUCGCc -3'
miRNA:   3'- -UGGuUCGaCGCGUa-----CUUGAGCa-----AGCG- -5'
25526 3' -51.5 NC_005337.1 + 87520 0.67 0.970129
Target:  5'- cGCCGAGCgcaGCGaagauguaCAUGAGCcCGUcCGCc -3'
miRNA:   3'- -UGGUUCGa--CGC--------GUACUUGaGCAaGCG- -5'
25526 3' -51.5 NC_005337.1 + 121231 0.67 0.970129
Target:  5'- cACgGAcuGCUGgGCAUcGAACUCGUccUCGg -3'
miRNA:   3'- -UGgUU--CGACgCGUA-CUUGAGCA--AGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.