miRNA display CGI


Results 21 - 40 of 125 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25526 5' -60.5 NC_005337.1 + 82359 0.66 0.643405
Target:  5'- -aGCGuGGCCG-CCgacugcacgGCGCcgAGGGCCUc -3'
miRNA:   3'- cgCGCuCCGGUaGGa--------CGCG--UUCCGGA- -5'
25526 5' -60.5 NC_005337.1 + 11375 0.66 0.643405
Target:  5'- aGCGCGcucGCCAUCggcgggcugaUGCGCcAGGGCCc -3'
miRNA:   3'- -CGCGCuc-CGGUAGg---------ACGCG-UUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 75631 0.66 0.633308
Target:  5'- cGCGCG-GGCCGUCgugauggGCGCGuccGGCg- -3'
miRNA:   3'- -CGCGCuCCGGUAGga-----CGCGUu--CCGga -5'
25526 5' -60.5 NC_005337.1 + 39163 0.66 0.633308
Target:  5'- cGCGCGGacaugaucGCCga-CUGCgGCAAGGCCg -3'
miRNA:   3'- -CGCGCUc-------CGGuagGACG-CGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 107139 0.66 0.633308
Target:  5'- uGUGUccgGAGGUCAcgcUgCUGCGCGuGGCCa -3'
miRNA:   3'- -CGCG---CUCCGGU---AgGACGCGUuCCGGa -5'
25526 5' -60.5 NC_005337.1 + 34735 0.66 0.633308
Target:  5'- cGCGCGAGcaGUCGgcg-GCGCAccGGGCCg -3'
miRNA:   3'- -CGCGCUC--CGGUaggaCGCGU--UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 32795 0.66 0.633308
Target:  5'- aGCGCGAGcaGCg--CCUGCGCcuGGUCc -3'
miRNA:   3'- -CGCGCUC--CGguaGGACGCGuuCCGGa -5'
25526 5' -60.5 NC_005337.1 + 35531 0.67 0.627249
Target:  5'- uCGCGAGGaaGUCCaugacggucagcacGCGCAGGGCg- -3'
miRNA:   3'- cGCGCUCCggUAGGa-------------CGCGUUCCGga -5'
25526 5' -60.5 NC_005337.1 + 68128 0.67 0.62321
Target:  5'- uCGCGGGGCCGguggCCgcGCGCGccccuagcGGGCg- -3'
miRNA:   3'- cGCGCUCCGGUa---GGa-CGCGU--------UCCGga -5'
25526 5' -60.5 NC_005337.1 + 111013 0.67 0.62321
Target:  5'- uGCGCGuAGcGCUcgAUCUUGCGCuuGGUCa -3'
miRNA:   3'- -CGCGC-UC-CGG--UAGGACGCGuuCCGGa -5'
25526 5' -60.5 NC_005337.1 + 40009 0.67 0.620181
Target:  5'- aCG-GAGGCCAUCC-GCGCGguggagaugcuagcGGGCg- -3'
miRNA:   3'- cGCgCUCCGGUAGGaCGCGU--------------UCCGga -5'
25526 5' -60.5 NC_005337.1 + 132047 0.67 0.613118
Target:  5'- uCGCGcGGU--UCCUGCGCGcgcucgcggcccGGGCCg -3'
miRNA:   3'- cGCGCuCCGguAGGACGCGU------------UCCGGa -5'
25526 5' -60.5 NC_005337.1 + 37958 0.67 0.613118
Target:  5'- aGCGgGAGGCaggucaccuUCCcgGCGCu-GGCCg -3'
miRNA:   3'- -CGCgCUCCGgu-------AGGa-CGCGuuCCGGa -5'
25526 5' -60.5 NC_005337.1 + 65405 0.67 0.613118
Target:  5'- uGCGCGAagauGUUcUCCgGCGCGGGGCUg -3'
miRNA:   3'- -CGCGCUc---CGGuAGGaCGCGUUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 9856 0.67 0.613118
Target:  5'- cGCGCGgcguugcccAGGaCCAUCUcGCGCAGaccguugaacgcGGCCa -3'
miRNA:   3'- -CGCGC---------UCC-GGUAGGaCGCGUU------------CCGGa -5'
25526 5' -60.5 NC_005337.1 + 69289 0.67 0.603041
Target:  5'- cGCGCGAcgGGCaGUUC-GCGCGggagaAGGCCUu -3'
miRNA:   3'- -CGCGCU--CCGgUAGGaCGCGU-----UCCGGA- -5'
25526 5' -60.5 NC_005337.1 + 130660 0.67 0.603041
Target:  5'- cGCGCGAGGgaCGUCUacgGCGCuacGCCg -3'
miRNA:   3'- -CGCGCUCCg-GUAGGa--CGCGuucCGGa -5'
25526 5' -60.5 NC_005337.1 + 58227 0.67 0.603041
Target:  5'- cGCGCGGcGGUCAuggagcgcaagUCCgGCGCGGcGGUCUu -3'
miRNA:   3'- -CGCGCU-CCGGU-----------AGGaCGCGUU-CCGGA- -5'
25526 5' -60.5 NC_005337.1 + 3517 0.67 0.603041
Target:  5'- uGCGCGAaGuCCA-CCUGCG--AGGCCa -3'
miRNA:   3'- -CGCGCUcC-GGUaGGACGCguUCCGGa -5'
25526 5' -60.5 NC_005337.1 + 108256 0.67 0.603041
Target:  5'- -aGCGAgguGGCCAUCUUcgacCGCGAGGCg- -3'
miRNA:   3'- cgCGCU---CCGGUAGGAc---GCGUUCCGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.