miRNA display CGI


Results 21 - 40 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25527 3' -55.8 NC_005337.1 + 5477 0.66 0.890141
Target:  5'- gCGGCACCGCuCGguGCgcacgccCGUGGAccCGAAu -3'
miRNA:   3'- -GUUGUGGCG-GCguCG-------GUACCU--GCUUc -5'
25527 3' -55.8 NC_005337.1 + 57049 0.66 0.890141
Target:  5'- gGGCGCguacuaCGCCGCAGCCA-GGccgcucuGCGAGc -3'
miRNA:   3'- gUUGUG------GCGGCGUCGGUaCC-------UGCUUc -5'
25527 3' -55.8 NC_005337.1 + 82179 0.66 0.883895
Target:  5'- -cGCACCuGCaCGCGGCCGccGGGCGc-- -3'
miRNA:   3'- guUGUGG-CG-GCGUCGGUa-CCUGCuuc -5'
25527 3' -55.8 NC_005337.1 + 37123 0.66 0.883895
Target:  5'- aGGCGCCGUCGUAGgaGacGACGAAGg -3'
miRNA:   3'- gUUGUGGCGGCGUCggUacCUGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 125382 0.66 0.883895
Target:  5'- aGACGCgGCCGC-GCCuGUGGcGCGGc- -3'
miRNA:   3'- gUUGUGgCGGCGuCGG-UACC-UGCUuc -5'
25527 3' -55.8 NC_005337.1 + 122201 0.66 0.883895
Target:  5'- --uCAUCGCCGCGGgCGcGGACGu-- -3'
miRNA:   3'- guuGUGGCGGCGUCgGUaCCUGCuuc -5'
25527 3' -55.8 NC_005337.1 + 120230 0.66 0.883895
Target:  5'- aCAGCAUCGCCgaGCAGUgCGUGuACGAAc -3'
miRNA:   3'- -GUUGUGGCGG--CGUCG-GUACcUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 14253 0.66 0.883895
Target:  5'- uCAAUACCGUCGCaugcaGGCCcucccuuacgAUGG-CGGAGu -3'
miRNA:   3'- -GUUGUGGCGGCG-----UCGG----------UACCuGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 35737 0.66 0.883895
Target:  5'- uGGCAa-GCaCGCGGCCGUcGGGCGGGc -3'
miRNA:   3'- gUUGUggCG-GCGUCGGUA-CCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 94437 0.66 0.883895
Target:  5'- gCAGCACU-CCGCAGaCCAgcaGGcCGGAGu -3'
miRNA:   3'- -GUUGUGGcGGCGUC-GGUa--CCuGCUUC- -5'
25527 3' -55.8 NC_005337.1 + 45555 0.66 0.88319
Target:  5'- uCGGCGCCGCCGUGGUgGUcuugaacGGACa--- -3'
miRNA:   3'- -GUUGUGGCGGCGUCGgUA-------CCUGcuuc -5'
25527 3' -55.8 NC_005337.1 + 66760 0.66 0.88319
Target:  5'- ---aACCGCCGCacgcgcgGGCCGcUGGGCGu-- -3'
miRNA:   3'- guugUGGCGGCG-------UCGGU-ACCUGCuuc -5'
25527 3' -55.8 NC_005337.1 + 28998 0.66 0.881772
Target:  5'- gCGGCgGCCGCCcagggucagccacgGCGGCCccaagccgugGUGGugGggGc -3'
miRNA:   3'- -GUUG-UGGCGG--------------CGUCGG----------UACCugCuuC- -5'
25527 3' -55.8 NC_005337.1 + 131495 0.66 0.876738
Target:  5'- gCGGCACCGguCCGC-GCuCGUGGACa--- -3'
miRNA:   3'- -GUUGUGGC--GGCGuCG-GUACCUGcuuc -5'
25527 3' -55.8 NC_005337.1 + 47955 0.66 0.876738
Target:  5'- uGACGCUGgcgaCCGaCGGCUucuucGUGGACGggGc -3'
miRNA:   3'- gUUGUGGC----GGC-GUCGG-----UACCUGCuuC- -5'
25527 3' -55.8 NC_005337.1 + 15415 0.66 0.876738
Target:  5'- -uACAUgGCCaGCAGCCcgccgaacgGGACGAGa -3'
miRNA:   3'- guUGUGgCGG-CGUCGGua-------CCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 68246 0.66 0.876738
Target:  5'- gAGCGCgGCCG--GCgCGUGGGCGAGc -3'
miRNA:   3'- gUUGUGgCGGCguCG-GUACCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 119031 0.66 0.876738
Target:  5'- uCGGCGCCGgCGCcGCCA-GGACc--- -3'
miRNA:   3'- -GUUGUGGCgGCGuCGGUaCCUGcuuc -5'
25527 3' -55.8 NC_005337.1 + 44216 0.66 0.876738
Target:  5'- ---gGCCGCCGCGGagc-GGGCGAGc -3'
miRNA:   3'- guugUGGCGGCGUCgguaCCUGCUUc -5'
25527 3' -55.8 NC_005337.1 + 114585 0.66 0.876738
Target:  5'- cCGGCGCUGUacgccaCGCGGCCGcUGGACa--- -3'
miRNA:   3'- -GUUGUGGCG------GCGUCGGU-ACCUGcuuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.