miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25527 5' -53 NC_005337.1 + 4385 0.68 0.926082
Target:  5'- cGGCc--GCCAUGuGCagCGGcgAGAUGCCg -3'
miRNA:   3'- -CCGaaaCGGUACcUGa-GCC--UCUACGG- -5'
25527 5' -53 NC_005337.1 + 118194 0.68 0.926082
Target:  5'- aGCUcgcGCCgGUGGGCgCGGAGccGCCc -3'
miRNA:   3'- cCGAaa-CGG-UACCUGaGCCUCuaCGG- -5'
25527 5' -53 NC_005337.1 + 88074 0.68 0.922735
Target:  5'- cGGCgagcucaugcagGCCGUGGACaUGGuGGAcGCCg -3'
miRNA:   3'- -CCGaaa---------CGGUACCUGaGCC-UCUaCGG- -5'
25527 5' -53 NC_005337.1 + 51970 0.68 0.920453
Target:  5'- cGCUcggUGCCcuaccuggugGUGGACUCcaGGAaGAUGCUc -3'
miRNA:   3'- cCGAa--ACGG----------UACCUGAG--CCU-CUACGG- -5'
25527 5' -53 NC_005337.1 + 51927 0.68 0.920453
Target:  5'- cGGCg--GCCAcgcuccUGGACUuccuguuggCGGuGGUGCUg -3'
miRNA:   3'- -CCGaaaCGGU------ACCUGA---------GCCuCUACGG- -5'
25527 5' -53 NC_005337.1 + 19171 0.68 0.920453
Target:  5'- cGGCgacgGCCAccgGGugUCcGGAcuccacGAUGCCc -3'
miRNA:   3'- -CCGaaa-CGGUa--CCugAG-CCU------CUACGG- -5'
25527 5' -53 NC_005337.1 + 38686 0.68 0.914572
Target:  5'- cGCUguucGCCGccUGGugUCGGcGGcgGCCc -3'
miRNA:   3'- cCGAaa--CGGU--ACCugAGCC-UCuaCGG- -5'
25527 5' -53 NC_005337.1 + 118602 0.68 0.914572
Target:  5'- aGGCcuccGUCGUGGACU-GGAGGaucGCCg -3'
miRNA:   3'- -CCGaaa-CGGUACCUGAgCCUCUa--CGG- -5'
25527 5' -53 NC_005337.1 + 82486 0.68 0.906552
Target:  5'- aGCUggUUGUCgAUGGACUCgucgcuguugcaguGGAaGAUGCCc -3'
miRNA:   3'- cCGA--AACGG-UACCUGAG--------------CCU-CUACGG- -5'
25527 5' -53 NC_005337.1 + 64493 0.69 0.895433
Target:  5'- uGCUcgGCCGUGGACcgcgucaCGGuGAaGCCc -3'
miRNA:   3'- cCGAaaCGGUACCUGa------GCCuCUaCGG- -5'
25527 5' -53 NC_005337.1 + 26798 0.69 0.887863
Target:  5'- cGGCcgUGCaGUGGAaggaguuCUUGGAGAUGgCg -3'
miRNA:   3'- -CCGaaACGgUACCU-------GAGCCUCUACgG- -5'
25527 5' -53 NC_005337.1 + 42283 0.69 0.881456
Target:  5'- gGGCUggagaaGCuCAUGGGCgacgaggagaCGGAGGUGaCCg -3'
miRNA:   3'- -CCGAaa----CG-GUACCUGa---------GCCUCUAC-GG- -5'
25527 5' -53 NC_005337.1 + 76330 0.69 0.881456
Target:  5'- gGGCgugGCCGUGaGGCagaGGAGcuUGCCg -3'
miRNA:   3'- -CCGaaaCGGUAC-CUGag-CCUCu-ACGG- -5'
25527 5' -53 NC_005337.1 + 77584 0.69 0.881456
Target:  5'- uGGCUcucguucucgaUGCUcuUGGACUCGGAGGucaUGCUc -3'
miRNA:   3'- -CCGAa----------ACGGu-ACCUGAGCCUCU---ACGG- -5'
25527 5' -53 NC_005337.1 + 103369 0.69 0.881456
Target:  5'- cGGCg-UGCUcgugAUGGACgCGGAGAUggagcGCCu -3'
miRNA:   3'- -CCGaaACGG----UACCUGaGCCUCUA-----CGG- -5'
25527 5' -53 NC_005337.1 + 127586 0.69 0.866544
Target:  5'- gGGCgcaGCCGUGGACgUCGccGAGucGUGCUg -3'
miRNA:   3'- -CCGaaaCGGUACCUG-AGC--CUC--UACGG- -5'
25527 5' -53 NC_005337.1 + 65145 0.69 0.86423
Target:  5'- aGGCggccGCCGUGGACcgCGGcucgcccgcagacgAGGUGCa -3'
miRNA:   3'- -CCGaaa-CGGUACCUGa-GCC--------------UCUACGg -5'
25527 5' -53 NC_005337.1 + 63327 0.7 0.850743
Target:  5'- aGGCgcUUGCuCGUGGACUuucCGGucauGGUGUCg -3'
miRNA:   3'- -CCGa-AACG-GUACCUGA---GCCu---CUACGG- -5'
25527 5' -53 NC_005337.1 + 62207 0.7 0.850743
Target:  5'- aGGUUcagUUuCCGgcgGGACaCGGGGAUGCCg -3'
miRNA:   3'- -CCGA---AAcGGUa--CCUGaGCCUCUACGG- -5'
25527 5' -53 NC_005337.1 + 68506 0.7 0.845837
Target:  5'- uGGCg--GCCGUGGgugcgcccgcgcucgGCUCuGAGcGUGCCg -3'
miRNA:   3'- -CCGaaaCGGUACC---------------UGAGcCUC-UACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.