miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25528 3' -60.3 NC_005337.1 + 53930 0.66 0.674456
Target:  5'- -cGUGCugguucagguaucGCGCCUGGAaccgcuccgcgguGGCGUCuaGCu -3'
miRNA:   3'- cuCACG-------------CGCGGACCU-------------UCGCAGcgCGc -5'
25528 3' -60.3 NC_005337.1 + 69239 0.66 0.666462
Target:  5'- ---cGCGCGCCUGGAcGUGcCG-GUGa -3'
miRNA:   3'- cucaCGCGCGGACCUuCGCaGCgCGC- -5'
25528 3' -60.3 NC_005337.1 + 96833 0.66 0.666462
Target:  5'- cGGGUGCGCaGCCgc--GGCGUgGCGUu -3'
miRNA:   3'- -CUCACGCG-CGGaccuUCGCAgCGCGc -5'
25528 3' -60.3 NC_005337.1 + 105199 0.66 0.666462
Target:  5'- gGGGUcCGCgGCCUGGggGCcgcugagcugCGCGCu -3'
miRNA:   3'- -CUCAcGCG-CGGACCuuCGca--------GCGCGc -5'
25528 3' -60.3 NC_005337.1 + 65422 0.66 0.666462
Target:  5'- cGGcGCGgGgCUGGuGGCGUCGCGg- -3'
miRNA:   3'- cUCaCGCgCgGACCuUCGCAGCGCgc -5'
25528 3' -60.3 NC_005337.1 + 99665 0.66 0.666462
Target:  5'- ---cGCGCGgCUGGgcGCGcccguggCGUGCGa -3'
miRNA:   3'- cucaCGCGCgGACCuuCGCa------GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 78555 0.66 0.666462
Target:  5'- cGG-GCGCGCCgugc-GCGUCGUGCu -3'
miRNA:   3'- cUCaCGCGCGGaccuuCGCAGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 124613 0.66 0.656445
Target:  5'- ---cGCGUgGCgCUGGAGGCaUUGCGCGc -3'
miRNA:   3'- cucaCGCG-CG-GACCUUCGcAGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 42657 0.66 0.656445
Target:  5'- -cGUGCGUGUCUGuGgcGCGaacgaCGCGCu -3'
miRNA:   3'- cuCACGCGCGGAC-CuuCGCa----GCGCGc -5'
25528 3' -60.3 NC_005337.1 + 120472 0.66 0.656445
Target:  5'- ---aGCGCGCgCUGGA----UCGCGCGg -3'
miRNA:   3'- cucaCGCGCG-GACCUucgcAGCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 131881 0.66 0.656445
Target:  5'- ---cGCuGCcuCCUGGAGGCGggCGCGCa -3'
miRNA:   3'- cucaCG-CGc-GGACCUUCGCa-GCGCGc -5'
25528 3' -60.3 NC_005337.1 + 110104 0.66 0.654439
Target:  5'- cGAGgcUGCGCGUCcauuacugcgagGGAGacGCGUUGCGCa -3'
miRNA:   3'- -CUC--ACGCGCGGa-----------CCUU--CGCAGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 68180 0.67 0.646409
Target:  5'- cGAGUacgcccugaGCGCgGCCccGGggGCGcCGCuGCGg -3'
miRNA:   3'- -CUCA---------CGCG-CGGa-CCuuCGCaGCG-CGC- -5'
25528 3' -60.3 NC_005337.1 + 124788 0.67 0.646409
Target:  5'- cGAGcucUGCGCGCagaUGGGccGGCGguggaCGCGCc -3'
miRNA:   3'- -CUC---ACGCGCGg--ACCU--UCGCa----GCGCGc -5'
25528 3' -60.3 NC_005337.1 + 71646 0.67 0.646409
Target:  5'- ---aGCaGCGCCUGGccGCGcacuucaaCGCGCGg -3'
miRNA:   3'- cucaCG-CGCGGACCuuCGCa-------GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 106560 0.67 0.640382
Target:  5'- ---aGCGCGCUgcgGGAgaucgugcagccgguGGCGUggaCGCGCGa -3'
miRNA:   3'- cucaCGCGCGGa--CCU---------------UCGCA---GCGCGC- -5'
25528 3' -60.3 NC_005337.1 + 11941 0.67 0.636363
Target:  5'- cGGGcGCGCGCCgucgagGGAcGCGcauaUCGCGUc -3'
miRNA:   3'- -CUCaCGCGCGGa-----CCUuCGC----AGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 133083 0.67 0.636363
Target:  5'- --aUGCGCGCCcGuGccGCGcUCGCGCa -3'
miRNA:   3'- cucACGCGCGGaC-CuuCGC-AGCGCGc -5'
25528 3' -60.3 NC_005337.1 + 85392 0.67 0.636363
Target:  5'- aGGUGCGUgGUCUGGccgccGGGCGgggaCGCGCa -3'
miRNA:   3'- cUCACGCG-CGGACC-----UUCGCa---GCGCGc -5'
25528 3' -60.3 NC_005337.1 + 108551 0.67 0.636363
Target:  5'- gGGGcGCGCGCCUGacgcuGGCG--GCGCGg -3'
miRNA:   3'- -CUCaCGCGCGGACcu---UCGCagCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.