miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25528 5' -54.2 NC_005337.1 + 34827 0.67 0.917127
Target:  5'- -aCGCGCGcg--UCCACGaGGUGgcccacgcCGCGg -3'
miRNA:   3'- caGCGCGCuauaAGGUGC-CCAU--------GCGC- -5'
25528 5' -54.2 NC_005337.1 + 35708 0.66 0.933459
Target:  5'- --aGCGCGGgcuccgUCUACcGGUGCGUGg -3'
miRNA:   3'- cagCGCGCUaua---AGGUGcCCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 35872 0.66 0.943126
Target:  5'- -aCGCGCGGaa--CUGCGGGacgugUGCGCGg -3'
miRNA:   3'- caGCGCGCUauaaGGUGCCC-----AUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 36285 0.67 0.911194
Target:  5'- -cUGCGCGAacgcggCCACGGuGU-CGCGg -3'
miRNA:   3'- caGCGCGCUauaa--GGUGCC-CAuGCGC- -5'
25528 5' -54.2 NC_005337.1 + 36982 0.67 0.92826
Target:  5'- cGUCGCucaugaucuccGCGGUcuccagCCGCGGGgACGUGg -3'
miRNA:   3'- -CAGCG-----------CGCUAuaa---GGUGCCCaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 39425 0.66 0.94628
Target:  5'- -aCGCGCGGgcgcccgcucgggCCGCGcucGGUGCGCa -3'
miRNA:   3'- caGCGCGCUauaa---------GGUGC---CCAUGCGc -5'
25528 5' -54.2 NC_005337.1 + 40044 0.66 0.955825
Target:  5'- cGUCGuCGCGGUGcgCCGaacCGGGgaccgguaccGCGCGg -3'
miRNA:   3'- -CAGC-GCGCUAUaaGGU---GCCCa---------UGCGC- -5'
25528 5' -54.2 NC_005337.1 + 41082 0.77 0.411024
Target:  5'- gGUCGUGCGAca-UCCACGGGaaguugaggUACGCGu -3'
miRNA:   3'- -CAGCGCGCUauaAGGUGCCC---------AUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 41396 0.69 0.839128
Target:  5'- -gCGCGCGGgcagAUgacguccggcgUCCGCGGGaGCGUGc -3'
miRNA:   3'- caGCGCGCUa---UA-----------AGGUGCCCaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 41440 0.67 0.91596
Target:  5'- cGUCGCGuUGAgcagcuccaCCGCGGGaGCGCu -3'
miRNA:   3'- -CAGCGC-GCUauaa-----GGUGCCCaUGCGc -5'
25528 5' -54.2 NC_005337.1 + 41743 0.66 0.933459
Target:  5'- cUCGCGCaccgcgUCCAUGGGgcggccGCGCa -3'
miRNA:   3'- cAGCGCGcuaua-AGGUGCCCa-----UGCGc -5'
25528 5' -54.2 NC_005337.1 + 48298 0.69 0.839128
Target:  5'- gGUCGCGCc----UCCGCaugcGGUGCGCGg -3'
miRNA:   3'- -CAGCGCGcuauaAGGUGc---CCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 49109 0.66 0.951828
Target:  5'- -gUGCGCGAgGUcaucgacucgcUCCGCGGGaagcuCGCGc -3'
miRNA:   3'- caGCGCGCUaUA-----------AGGUGCCCau---GCGC- -5'
25528 5' -54.2 NC_005337.1 + 50869 0.66 0.947596
Target:  5'- uGUCGCugauaaaccGCGAggacaugGUUUgGCGGGcGCGCGc -3'
miRNA:   3'- -CAGCG---------CGCUa------UAAGgUGCCCaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 54577 0.67 0.911194
Target:  5'- cUCGCGCGAgcUgaacgaccucUCCACGGGcaccuCGCc -3'
miRNA:   3'- cAGCGCGCUauA----------AGGUGCCCau---GCGc -5'
25528 5' -54.2 NC_005337.1 + 56454 0.68 0.895972
Target:  5'- --gGCGCGGUGgccgagaccaaggUCUACGGGcGCGUGc -3'
miRNA:   3'- cagCGCGCUAUa------------AGGUGCCCaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 60044 0.68 0.898605
Target:  5'- gGUCG-GCGAUGUgcucccacaggUUCAgGuGGUGCGCGa -3'
miRNA:   3'- -CAGCgCGCUAUA-----------AGGUgC-CCAUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 60795 0.71 0.767451
Target:  5'- -cCGCGaCGAgcuugggGUccUCCGCGGGcACGCGg -3'
miRNA:   3'- caGCGC-GCUa------UA--AGGUGCCCaUGCGC- -5'
25528 5' -54.2 NC_005337.1 + 73551 0.68 0.877953
Target:  5'- -cCGCGCGGUcgUCgACGGGcacuucuuCGUGa -3'
miRNA:   3'- caGCGCGCUAuaAGgUGCCCau------GCGC- -5'
25528 5' -54.2 NC_005337.1 + 74560 0.71 0.748116
Target:  5'- -gCGCGUGAUGcuggCCGCGcGGcACGCGg -3'
miRNA:   3'- caGCGCGCUAUaa--GGUGC-CCaUGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.