miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25529 3' -53.8 NC_005337.1 + 108884 0.66 0.960374
Target:  5'- --gGUCGUCGACGGcggCgGCaGCGAg -3'
miRNA:   3'- aagCAGCAGCUGCCcaaGgUGaUGCU- -5'
25529 3' -53.8 NC_005337.1 + 30222 0.66 0.956645
Target:  5'- gUCGUCGUCGAgCGuGcgcgaggagacGUUCCGC-GCGAu -3'
miRNA:   3'- aAGCAGCAGCU-GC-C-----------CAAGGUGaUGCU- -5'
25529 3' -53.8 NC_005337.1 + 111794 0.66 0.956645
Target:  5'- cUCcUCGUCGGCGGagUCCACcACGc -3'
miRNA:   3'- aAGcAGCAGCUGCCcaAGGUGaUGCu -5'
25529 3' -53.8 NC_005337.1 + 133496 0.66 0.951449
Target:  5'- cUCGUCGUCGGCGGcgcgcagcacauggCCGCcguCGAg -3'
miRNA:   3'- aAGCAGCAGCUGCCcaa-----------GGUGau-GCU- -5'
25529 3' -53.8 NC_005337.1 + 133496 0.66 0.951449
Target:  5'- cUCGUCGUCGGCGGcgcgcagcacauggCCGCcguCGAg -3'
miRNA:   3'- aAGCAGCAGCUGCCcaa-----------GGUGau-GCU- -5'
25529 3' -53.8 NC_005337.1 + 102964 0.66 0.948486
Target:  5'- -cCGUgGUCGugGGGaUgCGCUuCGAg -3'
miRNA:   3'- aaGCAgCAGCugCCCaAgGUGAuGCU- -5'
25529 3' -53.8 NC_005337.1 + 66855 0.66 0.948486
Target:  5'- -gCGUgGUCGAUGGGUcgaauccguugUCCGCgaaGAg -3'
miRNA:   3'- aaGCAgCAGCUGCCCA-----------AGGUGaugCU- -5'
25529 3' -53.8 NC_005337.1 + 98187 0.66 0.944048
Target:  5'- ---aUCGUCGGCGuGGUgcaCCACUuCGAc -3'
miRNA:   3'- aagcAGCAGCUGC-CCAa--GGUGAuGCU- -5'
25529 3' -53.8 NC_005337.1 + 19842 0.67 0.934444
Target:  5'- -aUGUUGUCcacagGugGGGUUCCGCUguuACGc -3'
miRNA:   3'- aaGCAGCAG-----CugCCCAAGGUGA---UGCu -5'
25529 3' -53.8 NC_005337.1 + 19215 0.67 0.918193
Target:  5'- -aCGUCGUCcguGACGGcgUCCACguccGCGAg -3'
miRNA:   3'- aaGCAGCAG---CUGCCcaAGGUGa---UGCU- -5'
25529 3' -53.8 NC_005337.1 + 102778 0.67 0.918193
Target:  5'- gUCGagcgCGUCGAaGGGUgagCCugUugGAc -3'
miRNA:   3'- aAGCa---GCAGCUgCCCAa--GGugAugCU- -5'
25529 3' -53.8 NC_005337.1 + 19812 0.67 0.917613
Target:  5'- -aCGUCGUCGACgucgucgGGGaaCCGCUccuCGAu -3'
miRNA:   3'- aaGCAGCAGCUG-------CCCaaGGUGAu--GCU- -5'
25529 3' -53.8 NC_005337.1 + 51983 0.68 0.899734
Target:  5'- -cUGgCGgCGGCGGGgcaCCACUACGAc -3'
miRNA:   3'- aaGCaGCaGCUGCCCaa-GGUGAUGCU- -5'
25529 3' -53.8 NC_005337.1 + 15189 0.68 0.899082
Target:  5'- gUCGcCGUCGA-GGGUcaugcagUCCagGCUGCGAc -3'
miRNA:   3'- aAGCaGCAGCUgCCCA-------AGG--UGAUGCU- -5'
25529 3' -53.8 NC_005337.1 + 6501 0.69 0.864246
Target:  5'- --gGUCGaUCGGCGGcUUCCGCU-CGAg -3'
miRNA:   3'- aagCAGC-AGCUGCCcAAGGUGAuGCU- -5'
25529 3' -53.8 NC_005337.1 + 94046 0.69 0.859611
Target:  5'- gUCGUCGaaCGACGaGGUUCCGggaacgggcugguccCUGCGGc -3'
miRNA:   3'- aAGCAGCa-GCUGC-CCAAGGU---------------GAUGCU- -5'
25529 3' -53.8 NC_005337.1 + 113592 0.69 0.846071
Target:  5'- aUCaugCGUCGACGGGUgcccgccccucuggUCCGCgccgUGCGAg -3'
miRNA:   3'- aAGca-GCAGCUGCCCA--------------AGGUG----AUGCU- -5'
25529 3' -53.8 NC_005337.1 + 64702 0.7 0.831103
Target:  5'- cUCGUCGcgcagcgucUCGAagaggcagcauccCGGGUUCCGCU-CGAu -3'
miRNA:   3'- aAGCAGC---------AGCU-------------GCCCAAGGUGAuGCU- -5'
25529 3' -53.8 NC_005337.1 + 81635 0.71 0.778067
Target:  5'- gUCGUgcuugcgccCGUCGACGaGGaUCCACUucaGCGAg -3'
miRNA:   3'- aAGCA---------GCAGCUGC-CCaAGGUGA---UGCU- -5'
25529 3' -53.8 NC_005337.1 + 118681 1.06 0.006609
Target:  5'- uUUCGUCGUCGACGGGUUCCACUACGAc -3'
miRNA:   3'- -AAGCAGCAGCUGCCCAAGGUGAUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.