miRNA display CGI


Results 21 - 40 of 110 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25529 5' -57.4 NC_005337.1 + 60252 0.66 0.854962
Target:  5'- ---aGCCGgagUCgGAGCCGGagucgGGGCaGGCg -3'
miRNA:   3'- ggagCGGCa--AG-UUCGGCCa----CCUG-CCG- -5'
25529 5' -57.4 NC_005337.1 + 125941 0.66 0.854962
Target:  5'- gCCcCGCUGcUCGAGgCGG-GcGugGGCg -3'
miRNA:   3'- -GGaGCGGCaAGUUCgGCCaC-CugCCG- -5'
25529 5' -57.4 NC_005337.1 + 86356 0.66 0.854962
Target:  5'- gCUUCGCCGgUCGGuGCguuUGGUG-ACGGCc -3'
miRNA:   3'- -GGAGCGGCaAGUU-CG---GCCACcUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 104576 0.66 0.847205
Target:  5'- gCCUCGCgCGUcCGu-CCGGUcgucGGCGGCg -3'
miRNA:   3'- -GGAGCG-GCAaGUucGGCCAc---CUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 1970 0.66 0.847205
Target:  5'- cCCUccgcCGCCGUgCAcGCCGGgucGGcgucagcuGCGGCu -3'
miRNA:   3'- -GGA----GCGGCAaGUuCGGCCa--CC--------UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 97728 0.66 0.847205
Target:  5'- gCUCGCCGgcgccgccCAGccGCCGG-GGacgcccGCGGCg -3'
miRNA:   3'- gGAGCGGCaa------GUU--CGGCCaCC------UGCCG- -5'
25529 5' -57.4 NC_005337.1 + 132097 0.66 0.847205
Target:  5'- gCCUgCGCCGUgcgcgUCGGcGCCG-UGcGCGGCa -3'
miRNA:   3'- -GGA-GCGGCA-----AGUU-CGGCcACcUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 98589 0.66 0.847205
Target:  5'- gCUCGCC-----AGCCGGUcgaaGGCGGCc -3'
miRNA:   3'- gGAGCGGcaaguUCGGCCAc---CUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 52490 0.66 0.847205
Target:  5'- gCUCGUCGg-CGAGCUGGUGuuccuGAacCGGCu -3'
miRNA:   3'- gGAGCGGCaaGUUCGGCCAC-----CU--GCCG- -5'
25529 5' -57.4 NC_005337.1 + 93972 0.66 0.842459
Target:  5'- gCCUUGCCGccaucgcccUCGGGCgaggaggucaccagaCGGUGGAaGGCc -3'
miRNA:   3'- -GGAGCGGCa--------AGUUCG---------------GCCACCUgCCG- -5'
25529 5' -57.4 NC_005337.1 + 34675 0.66 0.839258
Target:  5'- cUCUCGCCGUcCAGGCCcagcacGGUcagcgugcacucGcGCGGCa -3'
miRNA:   3'- -GGAGCGGCAaGUUCGG------CCA------------CcUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 33184 0.66 0.839258
Target:  5'- cCCgCGCCGgaCGGGCCcucccGACGGCg -3'
miRNA:   3'- -GGaGCGGCaaGUUCGGccac-CUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 18854 0.66 0.839258
Target:  5'- aCUC-CCGgac-GGCCGGcGaGACGGCg -3'
miRNA:   3'- gGAGcGGCaaguUCGGCCaC-CUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 22605 0.66 0.836029
Target:  5'- --cCGCCGUggacccggacuucuUCGAGCCGGcgcGGAuccgcgaggccuuCGGCg -3'
miRNA:   3'- ggaGCGGCA--------------AGUUCGGCCa--CCU-------------GCCG- -5'
25529 5' -57.4 NC_005337.1 + 85281 0.67 0.831131
Target:  5'- cCCUUGCCGgcgaccuGCUGGUccuuGACGGUg -3'
miRNA:   3'- -GGAGCGGCaaguu--CGGCCAc---CUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 100616 0.67 0.831131
Target:  5'- gCCUCGCUGgcCAAGgUGGUGuACuGCg -3'
miRNA:   3'- -GGAGCGGCaaGUUCgGCCACcUGcCG- -5'
25529 5' -57.4 NC_005337.1 + 40689 0.67 0.831131
Target:  5'- uCCUCGgCGga-GAGCCGGUgcuGGAacCGGa -3'
miRNA:   3'- -GGAGCgGCaagUUCGGCCA---CCU--GCCg -5'
25529 5' -57.4 NC_005337.1 + 66757 0.67 0.831131
Target:  5'- aCCaacCGCCGcacgcgCGGGCCGcUGGGCGuGCu -3'
miRNA:   3'- -GGa--GCGGCaa----GUUCGGCcACCUGC-CG- -5'
25529 5' -57.4 NC_005337.1 + 99073 0.67 0.831131
Target:  5'- gCUUCuCCGUguUCcGGCagGuGUGGACGGCg -3'
miRNA:   3'- -GGAGcGGCA--AGuUCGg-C-CACCUGCCG- -5'
25529 5' -57.4 NC_005337.1 + 112635 0.67 0.830308
Target:  5'- aCCUCauaCCGUgcacggaguccuUCAGGCuuCGGauacccaUGGACGGCg -3'
miRNA:   3'- -GGAGc--GGCA------------AGUUCG--GCC-------ACCUGCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.