miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25530 5' -57 NC_005337.1 + 78552 0.72 0.511309
Target:  5'- aCACgGGCGcgCCGuGCGCGUCGUGCUu-- -3'
miRNA:   3'- -GUG-CUGCa-GGC-CGUGCAGCACGAcaa -5'
25530 5' -57 NC_005337.1 + 80086 0.79 0.219824
Target:  5'- gACGACGUCCGGUGCG-CGUGcCUGa- -3'
miRNA:   3'- gUGCUGCAGGCCGUGCaGCAC-GACaa -5'
25530 5' -57 NC_005337.1 + 82868 0.7 0.642554
Target:  5'- gGCGGCGggaaCgGGCACGUUGgucaGCUGUa -3'
miRNA:   3'- gUGCUGCa---GgCCGUGCAGCa---CGACAa -5'
25530 5' -57 NC_005337.1 + 86226 0.66 0.850378
Target:  5'- gCACGGCGUCUauccGCGCGUCGUucgccGCcGUg -3'
miRNA:   3'- -GUGCUGCAGGc---CGUGCAGCA-----CGaCAa -5'
25530 5' -57 NC_005337.1 + 86236 0.7 0.642554
Target:  5'- uCACGGCGUUgGGCAcCGUCGcGUUGc- -3'
miRNA:   3'- -GUGCUGCAGgCCGU-GCAGCaCGACaa -5'
25530 5' -57 NC_005337.1 + 86408 0.67 0.771934
Target:  5'- gCGCG-CGUCCGGCGCGaUGUGgaUGg- -3'
miRNA:   3'- -GUGCuGCAGGCCGUGCaGCACg-ACaa -5'
25530 5' -57 NC_005337.1 + 88028 0.72 0.511309
Target:  5'- gCAgGAUGUgCCGGCGCacgugcacgggGUCGUGCUGg- -3'
miRNA:   3'- -GUgCUGCA-GGCCGUG-----------CAGCACGACaa -5'
25530 5' -57 NC_005337.1 + 92851 0.69 0.673234
Target:  5'- aCGCGACGUUCGGCACGcUCccGCg--- -3'
miRNA:   3'- -GUGCUGCAGGCCGUGC-AGcaCGacaa -5'
25530 5' -57 NC_005337.1 + 95235 0.67 0.790467
Target:  5'- gCGCGACugGUCCGuGCAC-UCGUGCg--- -3'
miRNA:   3'- -GUGCUG--CAGGC-CGUGcAGCACGacaa -5'
25530 5' -57 NC_005337.1 + 100214 0.68 0.762475
Target:  5'- cUACGACGgCCGGCGCcG-CGUGCg--- -3'
miRNA:   3'- -GUGCUGCaGGCCGUG-CaGCACGacaa -5'
25530 5' -57 NC_005337.1 + 101234 0.67 0.799522
Target:  5'- --aGGCGUCCGcGCGCGugcUCGcGCUGg- -3'
miRNA:   3'- gugCUGCAGGC-CGUGC---AGCaCGACaa -5'
25530 5' -57 NC_005337.1 + 111215 0.67 0.808426
Target:  5'- cCGCcGCGuUCCGGCGCGcggCGUGCg--- -3'
miRNA:   3'- -GUGcUGC-AGGCCGUGCa--GCACGacaa -5'
25530 5' -57 NC_005337.1 + 112585 0.66 0.834143
Target:  5'- cCACGGCGUgCGGaaACGUCGUGaccagGUa -3'
miRNA:   3'- -GUGCUGCAgGCCg-UGCAGCACga---CAa -5'
25530 5' -57 NC_005337.1 + 114438 0.66 0.834143
Target:  5'- gACGACGUCCGGCucauCGagGaGCgGUUc -3'
miRNA:   3'- gUGCUGCAGGCCGu---GCagCaCGaCAA- -5'
25530 5' -57 NC_005337.1 + 114728 0.78 0.254299
Target:  5'- uUACGACGUCCGGCGCGU---GCUGg- -3'
miRNA:   3'- -GUGCUGCAGGCCGUGCAgcaCGACaa -5'
25530 5' -57 NC_005337.1 + 115265 0.68 0.743218
Target:  5'- gCGCGACGcgcgcUCUGGCgaacGCGUCGUcgagcaGCUGUUc -3'
miRNA:   3'- -GUGCUGC-----AGGCCG----UGCAGCA------CGACAA- -5'
25530 5' -57 NC_005337.1 + 118573 1.04 0.00423
Target:  5'- gCACGACGUCCGGCACGUCGUGCUGUUc -3'
miRNA:   3'- -GUGCUGCAGGCCGUGCAGCACGACAA- -5'
25530 5' -57 NC_005337.1 + 118767 0.67 0.769109
Target:  5'- gCGCGACGUCCuagaugacgccggcGGCGgcgcCGUCGUGCc--- -3'
miRNA:   3'- -GUGCUGCAGG--------------CCGU----GCAGCACGacaa -5'
25530 5' -57 NC_005337.1 + 121829 0.67 0.81717
Target:  5'- gUAUGACG-CCGGC-CGaCGUGCUcGUg -3'
miRNA:   3'- -GUGCUGCaGGCCGuGCaGCACGA-CAa -5'
25530 5' -57 NC_005337.1 + 124706 0.77 0.286319
Target:  5'- gACGACGaggaccagcUCCGGUucaGCGUCGUGCUGa- -3'
miRNA:   3'- gUGCUGC---------AGGCCG---UGCAGCACGACaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.