Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25530 | 5' | -57 | NC_005337.1 | + | 118767 | 0.67 | 0.769109 |
Target: 5'- gCGCGACGUCCuagaugacgccggcGGCGgcgcCGUCGUGCc--- -3' miRNA: 3'- -GUGCUGCAGG--------------CCGU----GCAGCACGacaa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 100214 | 0.68 | 0.762475 |
Target: 5'- cUACGACGgCCGGCGCcG-CGUGCg--- -3' miRNA: 3'- -GUGCUGCaGGCCGUG-CaGCACGacaa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 127002 | 0.68 | 0.7529 |
Target: 5'- gCACGAcuaCGUCCagcuGCGCGUCGUGgaGa- -3' miRNA: 3'- -GUGCU---GCAGGc---CGUGCAGCACgaCaa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 115265 | 0.68 | 0.743218 |
Target: 5'- gCGCGACGcgcgcUCUGGCgaacGCGUCGUcgagcaGCUGUUc -3' miRNA: 3'- -GUGCUGC-----AGGCCG----UGCAGCA------CGACAA- -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 61055 | 0.68 | 0.743218 |
Target: 5'- cCugGugGUCCGGC-CGaUgGUGUUGa- -3' miRNA: 3'- -GugCugCAGGCCGuGC-AgCACGACaa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 25346 | 0.68 | 0.713625 |
Target: 5'- gGCGccACGUCgCGGCGCGUCucGCUGg- -3' miRNA: 3'- gUGC--UGCAG-GCCGUGCAGcaCGACaa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 127299 | 0.68 | 0.713625 |
Target: 5'- gCACGGCGUCaccccGCugGcCGUGCUGc- -3' miRNA: 3'- -GUGCUGCAGgc---CGugCaGCACGACaa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 92851 | 0.69 | 0.673234 |
Target: 5'- aCGCGACGUUCGGCACGcUCccGCg--- -3' miRNA: 3'- -GUGCUGCAGGCCGUGC-AGcaCGacaa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 86236 | 0.7 | 0.642554 |
Target: 5'- uCACGGCGUUgGGCAcCGUCGcGUUGc- -3' miRNA: 3'- -GUGCUGCAGgCCGU-GCAGCaCGACaa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 60878 | 0.7 | 0.642554 |
Target: 5'- aCGCG-CGUCCGGCGuuuCGUCGgGCgUGUg -3' miRNA: 3'- -GUGCuGCAGGCCGU---GCAGCaCG-ACAa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 82868 | 0.7 | 0.642554 |
Target: 5'- gGCGGCGggaaCgGGCACGUUGgucaGCUGUa -3' miRNA: 3'- gUGCUGCa---GgCCGUGCAGCa---CGACAa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 41407 | 0.7 | 0.6323 |
Target: 5'- gAUGACGUCCGGCguccGCGggagCGUGCcGa- -3' miRNA: 3'- gUGCUGCAGGCCG----UGCa---GCACGaCaa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 53900 | 0.7 | 0.6323 |
Target: 5'- aCACGaccggguccGCGaCCGGCGCGaacgCGUGCUGg- -3' miRNA: 3'- -GUGC---------UGCaGGCCGUGCa---GCACGACaa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 52055 | 0.7 | 0.622046 |
Target: 5'- gCACGGCGgaggCgGGC-CG-CGUGCUGUa -3' miRNA: 3'- -GUGCUGCa---GgCCGuGCaGCACGACAa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 88028 | 0.72 | 0.511309 |
Target: 5'- gCAgGAUGUgCCGGCGCacgugcacgggGUCGUGCUGg- -3' miRNA: 3'- -GUgCUGCA-GGCCGUG-----------CAGCACGACaa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 78552 | 0.72 | 0.511309 |
Target: 5'- aCACgGGCGcgCCGuGCGCGUCGUGCUu-- -3' miRNA: 3'- -GUG-CUGCa-GGC-CGUGCAGCACGAcaa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 66106 | 0.72 | 0.482414 |
Target: 5'- uGCGGCGUCUGcGCGCG-CGUGgaGUUc -3' miRNA: 3'- gUGCUGCAGGC-CGUGCaGCACgaCAA- -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 16758 | 0.72 | 0.482414 |
Target: 5'- uCACGGCGcgCCGGCugAUGUCGUGCa--- -3' miRNA: 3'- -GUGCUGCa-GGCCG--UGCAGCACGacaa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 68390 | 0.73 | 0.445167 |
Target: 5'- uGCGACGUCCGcccuGCGCG-CGUGCgugGUa -3' miRNA: 3'- gUGCUGCAGGC----CGUGCaGCACGa--CAa -5' |
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25530 | 5' | -57 | NC_005337.1 | + | 15704 | 0.76 | 0.321432 |
Target: 5'- gCACGACGUgCCGG-ACGUCGUGCg--- -3' miRNA: 3'- -GUGCUGCA-GGCCgUGCAGCACGacaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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