miRNA display CGI


Results 21 - 40 of 246 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25531 5' -54.2 NC_005337.1 + 14949 0.66 0.931459
Target:  5'- uGCGCAGgaUGGCcu-CgCGCAGCACa- -3'
miRNA:   3'- -CGUGUCgaACUGcauG-GCGUCGUGgu -5'
25531 5' -54.2 NC_005337.1 + 2782 0.66 0.931459
Target:  5'- cCACgAGCgcgGACcgGUGCCGCAuguGCACUAg -3'
miRNA:   3'- cGUG-UCGaa-CUG--CAUGGCGU---CGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 67959 0.66 0.931459
Target:  5'- cGC-CAGCcc-GCG-ACCGCGGCGCUc -3'
miRNA:   3'- -CGuGUCGaacUGCaUGGCGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 35582 0.66 0.931459
Target:  5'- uGCcUAGCgaGGCGgauccccGCCGgAGCACCGu -3'
miRNA:   3'- -CGuGUCGaaCUGCa------UGGCgUCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 61927 0.66 0.931459
Target:  5'- cGCGCGGaaCUUGGCGUugCgaggguucaGCAGguCCGu -3'
miRNA:   3'- -CGUGUC--GAACUGCAugG---------CGUCguGGU- -5'
25531 5' -54.2 NC_005337.1 + 113904 0.66 0.931459
Target:  5'- uGCACGGUg-GugGUcucgaacaagACCGUgAGCACCGc -3'
miRNA:   3'- -CGUGUCGaaCugCA----------UGGCG-UCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 127390 0.66 0.931459
Target:  5'- cGCGCGcGCgacaugGACGggcgcacGCUGCuGCACCAc -3'
miRNA:   3'- -CGUGU-CGaa----CUGCa------UGGCGuCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 60922 0.66 0.931459
Target:  5'- -uGCAGgaUGGCGUACaCGCGGUucgucuccuugGCCu -3'
miRNA:   3'- cgUGUCgaACUGCAUG-GCGUCG-----------UGGu -5'
25531 5' -54.2 NC_005337.1 + 49301 0.66 0.931459
Target:  5'- -aACGGgaUcACGUACCGCGGCgaGCCc -3'
miRNA:   3'- cgUGUCgaAcUGCAUGGCGUCG--UGGu -5'
25531 5' -54.2 NC_005337.1 + 10678 0.66 0.931459
Target:  5'- aGCGCGGC---ACGUgcgGCCGCAGCuCgCAg -3'
miRNA:   3'- -CGUGUCGaacUGCA---UGGCGUCGuG-GU- -5'
25531 5' -54.2 NC_005337.1 + 35439 0.66 0.931459
Target:  5'- cGCACGGCgcggugGGCGcgACCGCG--ACCGu -3'
miRNA:   3'- -CGUGUCGaa----CUGCa-UGGCGUcgUGGU- -5'
25531 5' -54.2 NC_005337.1 + 76813 0.66 0.931459
Target:  5'- uGCGCGcGCUUGAUGcGCaggcgguggaugCGCAGCGCa- -3'
miRNA:   3'- -CGUGU-CGAACUGCaUG------------GCGUCGUGgu -5'
25531 5' -54.2 NC_005337.1 + 90507 0.66 0.931459
Target:  5'- uGCugAGCUggaaccgGAUGcGCUGCAGCuuCAg -3'
miRNA:   3'- -CGugUCGAa------CUGCaUGGCGUCGugGU- -5'
25531 5' -54.2 NC_005337.1 + 63722 0.66 0.931459
Target:  5'- aCACAGCaucucgUUGGCGUAguCCGCgGGCAgCGa -3'
miRNA:   3'- cGUGUCG------AACUGCAU--GGCG-UCGUgGU- -5'
25531 5' -54.2 NC_005337.1 + 110498 0.66 0.931459
Target:  5'- gGC-CAGCUcGACGUGgCGCucGCGCg- -3'
miRNA:   3'- -CGuGUCGAaCUGCAUgGCGu-CGUGgu -5'
25531 5' -54.2 NC_005337.1 + 49368 0.66 0.931459
Target:  5'- uCGCGGa--GGCGgcgACCGCcGCACCGc -3'
miRNA:   3'- cGUGUCgaaCUGCa--UGGCGuCGUGGU- -5'
25531 5' -54.2 NC_005337.1 + 122393 0.66 0.931459
Target:  5'- cGCGgGGCa-GugGUACguggGCAGCGCCu -3'
miRNA:   3'- -CGUgUCGaaCugCAUGg---CGUCGUGGu -5'
25531 5' -54.2 NC_005337.1 + 77783 0.66 0.931459
Target:  5'- cGCGgAGUUgggGagcGCGUACgGCAGCACg- -3'
miRNA:   3'- -CGUgUCGAa--C---UGCAUGgCGUCGUGgu -5'
25531 5' -54.2 NC_005337.1 + 26057 0.66 0.931459
Target:  5'- aGCGCGGCUcGcacgccaccgcaAUGUAgCGCGGCGCgGg -3'
miRNA:   3'- -CGUGUCGAaC------------UGCAUgGCGUCGUGgU- -5'
25531 5' -54.2 NC_005337.1 + 108573 0.66 0.927178
Target:  5'- gGCGCGGCcggacaacccgcuccUgcgcGACGccgccuucgaggGCCGCGGCGCCGa -3'
miRNA:   3'- -CGUGUCG---------------Aa---CUGCa-----------UGGCGUCGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.