Results 21 - 36 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25532 | 3' | -51.5 | NC_005337.1 | + | 51929 | 0.68 | 0.957504 |
Target: 5'- cCUUCggcaCGGGCAuCGGcgGCaUGGUGGACa -3' miRNA: 3'- -GAAGa---GCUUGU-GCCa-CG-ACUACCUGc -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 96233 | 0.68 | 0.953525 |
Target: 5'- ----aCGAugAUGGUGaUGAUGGACa -3' miRNA: 3'- gaagaGCUugUGCCACgACUACCUGc -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 24840 | 0.68 | 0.953525 |
Target: 5'- --gCUCGAGCgGCGcGUGCUcGA-GGACGu -3' miRNA: 3'- gaaGAGCUUG-UGC-CACGA-CUaCCUGC- -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 35424 | 0.68 | 0.953114 |
Target: 5'- aCUgCUCGAuggacgcGCACGGcGC-GGUGGGCGc -3' miRNA: 3'- -GAaGAGCU-------UGUGCCaCGaCUACCUGC- -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 101123 | 0.7 | 0.918099 |
Target: 5'- --aCUCaGAGCGCGGcUGCgcggaccUGGUGGACa -3' miRNA: 3'- gaaGAG-CUUGUGCC-ACG-------ACUACCUGc -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 75397 | 0.7 | 0.912693 |
Target: 5'- -gUCUUGGccGCGCGGaUGCUGc-GGACGg -3' miRNA: 3'- gaAGAGCU--UGUGCC-ACGACuaCCUGC- -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 93235 | 0.71 | 0.878987 |
Target: 5'- aCUUCcgCGAcaACGCGGagcgGCUGGUGG-CGg -3' miRNA: 3'- -GAAGa-GCU--UGUGCCa---CGACUACCuGC- -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 6199 | 0.71 | 0.863831 |
Target: 5'- -gUCUCGGGCGCGGcGaCUGcauGUGGugGu -3' miRNA: 3'- gaAGAGCUUGUGCCaC-GAC---UACCugC- -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 86983 | 0.73 | 0.804151 |
Target: 5'- gCUUCUUGAAgcCGCGGagcuUGUUGAUGGAgGa -3' miRNA: 3'- -GAAGAGCUU--GUGCC----ACGACUACCUgC- -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 65416 | 0.74 | 0.726221 |
Target: 5'- gUUCUCcGGCGCGGgGCUGGUGG-CGu -3' miRNA: 3'- gAAGAGcUUGUGCCaCGACUACCuGC- -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 117722 | 0.74 | 0.715983 |
Target: 5'- ----gUGAAgACGGUGCUGcgGGACGc -3' miRNA: 3'- gaagaGCUUgUGCCACGACuaCCUGC- -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 126396 | 0.75 | 0.657522 |
Target: 5'- -cUCUgGGAUACGGUGCUGGaaaaggcggccgaccUGGACu -3' miRNA: 3'- gaAGAgCUUGUGCCACGACU---------------ACCUGc -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 24611 | 0.76 | 0.606798 |
Target: 5'- cCUUCggcgCGGGCACGGaggugacggaaaaGCUGGUGGACGc -3' miRNA: 3'- -GAAGa---GCUUGUGCCa------------CGACUACCUGC- -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 127775 | 0.76 | 0.600471 |
Target: 5'- -gUCUUGAcggaGCGCguggugcgGGUGCUGGUGGACGc -3' miRNA: 3'- gaAGAGCU----UGUG--------CCACGACUACCUGC- -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 97820 | 0.84 | 0.271443 |
Target: 5'- uCUUCUCGGGCACGGgGCUGGaccuccccaaccUGGACGc -3' miRNA: 3'- -GAAGAGCUUGUGCCaCGACU------------ACCUGC- -5' |
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25532 | 3' | -51.5 | NC_005337.1 | + | 117479 | 1.11 | 0.005483 |
Target: 5'- aCUUCUCGAACACGGUGCUGAUGGACGg -3' miRNA: 3'- -GAAGAGCUUGUGCCACGACUACCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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