miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25532 5' -60.1 NC_005337.1 + 43829 0.66 0.710667
Target:  5'- -cCACGcuGCAgcgGGCCGGCGgCGCgGUGg -3'
miRNA:   3'- acGUGC--UGUag-UCGGCCGC-GCGgCAC- -5'
25532 5' -60.1 NC_005337.1 + 12904 0.66 0.710667
Target:  5'- uUGUGCGGCAUCuucuuCCcGUGCGCCGa- -3'
miRNA:   3'- -ACGUGCUGUAGuc---GGcCGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 17170 0.66 0.700813
Target:  5'- cGCAuaucacCGACAgcgcCAGCagGGCGCGCgGUa -3'
miRNA:   3'- aCGU------GCUGUa---GUCGg-CCGCGCGgCAc -5'
25532 5' -60.1 NC_005337.1 + 12048 0.66 0.700813
Target:  5'- cGUGCGGuCGUCcGgCGuGCGCGCCGa- -3'
miRNA:   3'- aCGUGCU-GUAGuCgGC-CGCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 90371 0.66 0.700813
Target:  5'- cGCGCGGCcUCuucCCGGC-CGCgCGUGc -3'
miRNA:   3'- aCGUGCUGuAGuc-GGCCGcGCG-GCAC- -5'
25532 5' -60.1 NC_005337.1 + 77653 0.66 0.700813
Target:  5'- aGCGCGuCGUagacgCGGCCGGCGaagGCCa-- -3'
miRNA:   3'- aCGUGCuGUA-----GUCGGCCGCg--CGGcac -5'
25532 5' -60.1 NC_005337.1 + 68129 0.66 0.700813
Target:  5'- cGCGgGGCcggUGGCCGcGCGCGCCc-- -3'
miRNA:   3'- aCGUgCUGua-GUCGGC-CGCGCGGcac -5'
25532 5' -60.1 NC_005337.1 + 32046 0.66 0.700813
Target:  5'- cUGCACGcgcCA-CAGCCGG-GCGUaCGUGu -3'
miRNA:   3'- -ACGUGCu--GUaGUCGGCCgCGCG-GCAC- -5'
25532 5' -60.1 NC_005337.1 + 127888 0.66 0.700813
Target:  5'- cGCGCGGC----GCCGGCGaGCgCGUGc -3'
miRNA:   3'- aCGUGCUGuaguCGGCCGCgCG-GCAC- -5'
25532 5' -60.1 NC_005337.1 + 118763 0.66 0.700813
Target:  5'- gUGCGUGACAUgcuuGCUGGCGaCGCUGUc -3'
miRNA:   3'- -ACGUGCUGUAgu--CGGCCGC-GCGGCAc -5'
25532 5' -60.1 NC_005337.1 + 23064 0.66 0.698836
Target:  5'- cGCGCGccggaacGCggCGGCCGugcccggcaucguGCGCGCgGUGg -3'
miRNA:   3'- aCGUGC-------UGuaGUCGGC-------------CGCGCGgCAC- -5'
25532 5' -60.1 NC_005337.1 + 94846 0.66 0.690904
Target:  5'- aGCGCGGCccgAGCgGGCGCccGCgCGUGu -3'
miRNA:   3'- aCGUGCUGuagUCGgCCGCG--CG-GCAC- -5'
25532 5' -60.1 NC_005337.1 + 80673 0.66 0.690904
Target:  5'- cUGCGCGGCGcgCuuCCGcGCGCGCaUGUGc -3'
miRNA:   3'- -ACGUGCUGUa-GucGGC-CGCGCG-GCAC- -5'
25532 5' -60.1 NC_005337.1 + 132487 0.66 0.690904
Target:  5'- gUGCgGCGGCAggagggacuggCGGCCGGCGggaUGCCGc- -3'
miRNA:   3'- -ACG-UGCUGUa----------GUCGGCCGC---GCGGCac -5'
25532 5' -60.1 NC_005337.1 + 97665 0.66 0.690904
Target:  5'- cGCGCGcGCGcUCcaGGCCgcgGGCGUGCaCGUGg -3'
miRNA:   3'- aCGUGC-UGU-AG--UCGG---CCGCGCG-GCAC- -5'
25532 5' -60.1 NC_005337.1 + 59336 0.66 0.690904
Target:  5'- aGCACcGCAUCcgcgcGGCCGcGCGCGCg--- -3'
miRNA:   3'- aCGUGcUGUAG-----UCGGC-CGCGCGgcac -5'
25532 5' -60.1 NC_005337.1 + 132081 0.66 0.690904
Target:  5'- cGCGCccGCGUCcGCCGcCuGCGCCGUGc -3'
miRNA:   3'- aCGUGc-UGUAGuCGGCcG-CGCGGCAC- -5'
25532 5' -60.1 NC_005337.1 + 123929 0.66 0.687921
Target:  5'- gGCgugACGACGUUccccacgccccgcgAGCCGGuCGCGCUGc- -3'
miRNA:   3'- aCG---UGCUGUAG--------------UCGGCC-GCGCGGCac -5'
25532 5' -60.1 NC_005337.1 + 45923 0.66 0.684934
Target:  5'- cGCGCGAagaagacggucuucuCGcgCGcGCCGGCGCG-CGUGg -3'
miRNA:   3'- aCGUGCU---------------GUa-GU-CGGCCGCGCgGCAC- -5'
25532 5' -60.1 NC_005337.1 + 69969 0.66 0.680946
Target:  5'- gGCACGcGCAagAcGCCGGaCGCgaccGCCGUGc -3'
miRNA:   3'- aCGUGC-UGUagU-CGGCC-GCG----CGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.