miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25533 3' -55.4 NC_005337.1 + 94215 0.67 0.871863
Target:  5'- cGUUCGgacacuagCGGGCGGuGAGCUCGaugucggucUGGuucaGGCg -3'
miRNA:   3'- -CAAGCa-------GCUCGUC-CUCGAGC---------ACC----UCG- -5'
25533 3' -55.4 NC_005337.1 + 93661 0.7 0.730152
Target:  5'- cUUCGUCGAGCuccuGGAGgUCcguuUGGuGCg -3'
miRNA:   3'- cAAGCAGCUCGu---CCUCgAGc---ACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 88091 0.66 0.906052
Target:  5'- --cCGUgGAcauGguGGAcGC-CGUGGAGCg -3'
miRNA:   3'- caaGCAgCU---CguCCU-CGaGCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 80241 0.66 0.888996
Target:  5'- ---gGUCGgcguacaucuccagcGGCAGGAGCUCGaucuUGG-GCu -3'
miRNA:   3'- caagCAGC---------------UCGUCCUCGAGC----ACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 77625 0.66 0.918072
Target:  5'- -cUCGUaGAGCAGcGAGUgCGUGacguaGAGCg -3'
miRNA:   3'- caAGCAgCUCGUC-CUCGaGCAC-----CUCG- -5'
25533 3' -55.4 NC_005337.1 + 72369 0.7 0.740052
Target:  5'- --aCGUCGAGaucGGGGacaUCGUGGuGCa -3'
miRNA:   3'- caaGCAGCUCgu-CCUCg--AGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 72228 0.69 0.778594
Target:  5'- -aUCGUCGAGUGGGGGCgcgccuUCGUaGAcGCc -3'
miRNA:   3'- caAGCAGCUCGUCCUCG------AGCAcCU-CG- -5'
25533 3' -55.4 NC_005337.1 + 70137 0.69 0.769137
Target:  5'- --cCGUCaGGGaCAGGuGCUUGUuucGGAGCg -3'
miRNA:   3'- caaGCAG-CUC-GUCCuCGAGCA---CCUCG- -5'
25533 3' -55.4 NC_005337.1 + 66326 0.75 0.412802
Target:  5'- -gUCG-CGGGCuGGcgacacguGCUCGUGGAGCg -3'
miRNA:   3'- caAGCaGCUCGuCCu-------CGAGCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 64374 0.66 0.893073
Target:  5'- --gCG-CGcGCAGGAGCacgUUGUcGGAGCg -3'
miRNA:   3'- caaGCaGCuCGUCCUCG---AGCA-CCUCG- -5'
25533 3' -55.4 NC_005337.1 + 63355 0.67 0.87916
Target:  5'- ---aGUCGAGgAGGAGCUgcagaaccaggaCGUGGcuuccggaGGCg -3'
miRNA:   3'- caagCAGCUCgUCCUCGA------------GCACC--------UCG- -5'
25533 3' -55.4 NC_005337.1 + 60479 0.75 0.439699
Target:  5'- ---aGUCGAGCGuGAGCUCGUGcGGCu -3'
miRNA:   3'- caagCAGCUCGUcCUCGAGCACcUCG- -5'
25533 3' -55.4 NC_005337.1 + 56312 0.68 0.823689
Target:  5'- -cUCGagaUCucGCAGGAGCgcuUCGUGGuGCu -3'
miRNA:   3'- caAGC---AGcuCGUCCUCG---AGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 51501 0.67 0.871863
Target:  5'- --cCGUCGucaaccucacGCcGGuGUUCGUGGAGCc -3'
miRNA:   3'- caaGCAGCu---------CGuCCuCGAGCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 47530 0.7 0.730152
Target:  5'- -aUCGUgccgGAGCGGGAcCUCGUGG-GCc -3'
miRNA:   3'- caAGCAg---CUCGUCCUcGAGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 42773 0.66 0.917494
Target:  5'- cGUUCGugugcUCGGGCGGcAGCgugaccuUCGUGGcGGCg -3'
miRNA:   3'- -CAAGC-----AGCUCGUCcUCG-------AGCACC-UCG- -5'
25533 3' -55.4 NC_005337.1 + 41850 0.83 0.162809
Target:  5'- -cUCGUCGGGCGGGAGCgggcUCGUGGcGUa -3'
miRNA:   3'- caAGCAGCUCGUCCUCG----AGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 39607 0.68 0.823689
Target:  5'- cUUCGgCGGGCGGGAGCggaUCGUcucGcGGGCc -3'
miRNA:   3'- cAAGCaGCUCGUCCUCG---AGCA---C-CUCG- -5'
25533 3' -55.4 NC_005337.1 + 36698 0.66 0.893073
Target:  5'- --gCGUCcacgGAGUucAGGGGCUUGUGGAa- -3'
miRNA:   3'- caaGCAG----CUCG--UCCUCGAGCACCUcg -5'
25533 3' -55.4 NC_005337.1 + 24586 0.67 0.87916
Target:  5'- ---aG-CGAGCAGaccaucGAGCUCGUGGccuucGGCg -3'
miRNA:   3'- caagCaGCUCGUC------CUCGAGCACC-----UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.