miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25533 3' -55.4 NC_005337.1 + 105476 0.68 0.831364
Target:  5'- -gUCGUgcugcggcgcaUGAGCaagauccGGGAGUUCGUGGcGCa -3'
miRNA:   3'- caAGCA-----------GCUCG-------UCCUCGAGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 892 0.68 0.823689
Target:  5'- --gCGcCGAGCAGGAGCccgagcgCGacGAGCg -3'
miRNA:   3'- caaGCaGCUCGUCCUCGa------GCacCUCG- -5'
25533 3' -55.4 NC_005337.1 + 56312 0.68 0.823689
Target:  5'- -cUCGagaUCucGCAGGAGCgcuUCGUGGuGCu -3'
miRNA:   3'- caAGC---AGcuCGUCCUCG---AGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 2333 0.68 0.823689
Target:  5'- ---aGUUGAGCAGGuacAGCUCc-GGGGCc -3'
miRNA:   3'- caagCAGCUCGUCC---UCGAGcaCCUCG- -5'
25533 3' -55.4 NC_005337.1 + 39607 0.68 0.823689
Target:  5'- cUUCGgCGGGCGGGAGCggaUCGUcucGcGGGCc -3'
miRNA:   3'- cAAGCaGCUCGUCCUCG---AGCA---C-CUCG- -5'
25533 3' -55.4 NC_005337.1 + 892 0.68 0.823689
Target:  5'- --gCGcCGAGCAGGAGCccgagcgCGacGAGCg -3'
miRNA:   3'- caaGCaGCUCGUCCUCGa------GCacCUCG- -5'
25533 3' -55.4 NC_005337.1 + 106255 0.68 0.797098
Target:  5'- --gCGgcaggCGAuGCAGG-GCagCGUGGAGCa -3'
miRNA:   3'- caaGCa----GCU-CGUCCuCGa-GCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 72228 0.69 0.778594
Target:  5'- -aUCGUCGAGUGGGGGCgcgccuUCGUaGAcGCc -3'
miRNA:   3'- caAGCAGCUCGUCCUCG------AGCAcCU-CG- -5'
25533 3' -55.4 NC_005337.1 + 130712 0.69 0.778594
Target:  5'- cGUcCG-CGuGCGuGGAGCUCGUcGAGCg -3'
miRNA:   3'- -CAaGCaGCuCGU-CCUCGAGCAcCUCG- -5'
25533 3' -55.4 NC_005337.1 + 17589 0.69 0.769137
Target:  5'- aUUUGgcauugGAGCGGGAGCUgGagcgGGAGCu -3'
miRNA:   3'- cAAGCag----CUCGUCCUCGAgCa---CCUCG- -5'
25533 3' -55.4 NC_005337.1 + 70137 0.69 0.769137
Target:  5'- --cCGUCaGGGaCAGGuGCUUGUuucGGAGCg -3'
miRNA:   3'- caaGCAG-CUC-GUCCuCGAGCA---CCUCG- -5'
25533 3' -55.4 NC_005337.1 + 131072 0.69 0.759554
Target:  5'- aGggCGaCGAGCGcGAGUUCGUGGucuGCg -3'
miRNA:   3'- -CaaGCaGCUCGUcCUCGAGCACCu--CG- -5'
25533 3' -55.4 NC_005337.1 + 123620 0.69 0.749856
Target:  5'- -cUCG-CGGGUgcuGAcGCUCGUGGAGCu -3'
miRNA:   3'- caAGCaGCUCGuc-CU-CGAGCACCUCG- -5'
25533 3' -55.4 NC_005337.1 + 72369 0.7 0.740052
Target:  5'- --aCGUCGAGaucGGGGacaUCGUGGuGCa -3'
miRNA:   3'- caaGCAGCUCgu-CCUCg--AGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 47530 0.7 0.730152
Target:  5'- -aUCGUgccgGAGCGGGAcCUCGUGG-GCc -3'
miRNA:   3'- caAGCAg---CUCGUCCUcGAGCACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 93661 0.7 0.730152
Target:  5'- cUUCGUCGAGCuccuGGAGgUCcguuUGGuGCg -3'
miRNA:   3'- cAAGCAGCUCGu---CCUCgAGc---ACCuCG- -5'
25533 3' -55.4 NC_005337.1 + 133444 0.7 0.714136
Target:  5'- cUUCGUCGAGCccGGGcccgcgcgcgcggacGGCUCcGcGGAGCu -3'
miRNA:   3'- cAAGCAGCUCG--UCC---------------UCGAG-CaCCUCG- -5'
25533 3' -55.4 NC_005337.1 + 133444 0.7 0.714136
Target:  5'- cUUCGUCGAGCccGGGcccgcgcgcgcggacGGCUCcGcGGAGCu -3'
miRNA:   3'- cAAGCAGCUCG--UCC---------------UCGAG-CaCCUCG- -5'
25533 3' -55.4 NC_005337.1 + 100237 0.7 0.710101
Target:  5'- --cCGUCGAcgGCA--AGCUCGUGGAGg -3'
miRNA:   3'- caaGCAGCU--CGUccUCGAGCACCUCg -5'
25533 3' -55.4 NC_005337.1 + 122662 0.7 0.68978
Target:  5'- -cUCGUCGAGCAGGuGGCcCGccgGGuGUg -3'
miRNA:   3'- caAGCAGCUCGUCC-UCGaGCa--CCuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.