miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25533 5' -56.7 NC_005337.1 + 14757 0.66 0.859627
Target:  5'- -cGCCGAA-GAGCGCuuCCAUCGccUCg -3'
miRNA:   3'- ccCGGCUUgCUCGCGu-GGUAGCucAG- -5'
25533 5' -56.7 NC_005337.1 + 70980 0.66 0.859627
Target:  5'- cGGuGCUGAGCGGGCucuaCAUCGAGa- -3'
miRNA:   3'- -CC-CGGCUUGCUCGcgugGUAGCUCag -5'
25533 5' -56.7 NC_005337.1 + 46366 0.66 0.859627
Target:  5'- -cGCCG-GCGcaGGCGCGCCAgCGcGUCa -3'
miRNA:   3'- ccCGGCuUGC--UCGCGUGGUaGCuCAG- -5'
25533 5' -56.7 NC_005337.1 + 84098 0.66 0.85188
Target:  5'- -cGCgGAcACGGGCGCggucGCCGucuguuUCGAGUCg -3'
miRNA:   3'- ccCGgCU-UGCUCGCG----UGGU------AGCUCAG- -5'
25533 5' -56.7 NC_005337.1 + 70866 0.66 0.85188
Target:  5'- -cGCUGuACGAGCGCGCCAU---GUCc -3'
miRNA:   3'- ccCGGCuUGCUCGCGUGGUAgcuCAG- -5'
25533 5' -56.7 NC_005337.1 + 91883 0.66 0.85188
Target:  5'- aGGCCGcGCGccGCgGCGCCucCGGGUCg -3'
miRNA:   3'- cCCGGCuUGCu-CG-CGUGGuaGCUCAG- -5'
25533 5' -56.7 NC_005337.1 + 67769 0.66 0.85188
Target:  5'- cGGCCGGcUGcAGCgGCuCCAgCGAGUCg -3'
miRNA:   3'- cCCGGCUuGC-UCG-CGuGGUaGCUCAG- -5'
25533 5' -56.7 NC_005337.1 + 100220 0.67 0.843935
Target:  5'- cGGCCGGcgccGCGuGCGCGugAUCGcGGUCc -3'
miRNA:   3'- cCCGGCU----UGCuCGCGUggUAGC-UCAG- -5'
25533 5' -56.7 NC_005337.1 + 28492 0.67 0.843935
Target:  5'- cGGCCGcGCG-GCGCGCgGUCGcG-Cg -3'
miRNA:   3'- cCCGGCuUGCuCGCGUGgUAGCuCaG- -5'
25533 5' -56.7 NC_005337.1 + 111016 0.67 0.843935
Target:  5'- aGGGCCGuAACGuGC-CGCCGUCa---- -3'
miRNA:   3'- -CCCGGC-UUGCuCGcGUGGUAGcucag -5'
25533 5' -56.7 NC_005337.1 + 64850 0.67 0.841514
Target:  5'- uGGcGCCGGACGAGCGgaagggcacaugucCGCgAUCGcGUg -3'
miRNA:   3'- -CC-CGGCUUGCUCGC--------------GUGgUAGCuCAg -5'
25533 5' -56.7 NC_005337.1 + 93701 0.67 0.8358
Target:  5'- -cGCC-AGCGAGCGguCCAUgGAGg- -3'
miRNA:   3'- ccCGGcUUGCUCGCguGGUAgCUCag -5'
25533 5' -56.7 NC_005337.1 + 30758 0.67 0.8358
Target:  5'- cGGGCgGcAGCGugcggaAGCGCugCAcgGAGUCg -3'
miRNA:   3'- -CCCGgC-UUGC------UCGCGugGUagCUCAG- -5'
25533 5' -56.7 NC_005337.1 + 83286 0.67 0.8358
Target:  5'- cGGGCCGAcgacgaacGCGcGGCGCcCCGcCcGGUCg -3'
miRNA:   3'- -CCCGGCU--------UGC-UCGCGuGGUaGcUCAG- -5'
25533 5' -56.7 NC_005337.1 + 118794 0.67 0.827479
Target:  5'- cGGcGCCGucgugcCGcGCGCGCCGUCG-GUg -3'
miRNA:   3'- -CC-CGGCuu----GCuCGCGUGGUAGCuCAg -5'
25533 5' -56.7 NC_005337.1 + 87795 0.67 0.818982
Target:  5'- cGGCCGcGCGGGCcacccacacCACCAg-GAGUCg -3'
miRNA:   3'- cCCGGCuUGCUCGc--------GUGGUagCUCAG- -5'
25533 5' -56.7 NC_005337.1 + 983 0.67 0.813803
Target:  5'- gGGGCUGGcgcggcgcgcggaggGCGGGCGUcgccuggagGCCGUCGAa-- -3'
miRNA:   3'- -CCCGGCU---------------UGCUCGCG---------UGGUAGCUcag -5'
25533 5' -56.7 NC_005337.1 + 983 0.67 0.813803
Target:  5'- gGGGCUGGcgcggcgcgcggaggGCGGGCGUcgccuggagGCCGUCGAa-- -3'
miRNA:   3'- -CCCGGCU---------------UGCUCGCG---------UGGUAGCUcag -5'
25533 5' -56.7 NC_005337.1 + 21116 0.67 0.810317
Target:  5'- cGGCCGccACGcAGCGCACCG-CGAa-- -3'
miRNA:   3'- cCCGGCu-UGC-UCGCGUGGUaGCUcag -5'
25533 5' -56.7 NC_005337.1 + 108758 0.67 0.810317
Target:  5'- uGGGCCGcuGCcugGAGCGCGUCAUaaCGAGUa -3'
miRNA:   3'- -CCCGGCu-UG---CUCGCGUGGUA--GCUCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.