miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25534 3' -56.1 NC_005337.1 + 70901 0.67 0.806126
Target:  5'- gCCUCCGGaagccACGUCcugGUUCUGCAGc- -3'
miRNA:   3'- gGGAGGCCgu---UGCAG---UAGGACGUCua -5'
25534 3' -56.1 NC_005337.1 + 58464 0.67 0.814992
Target:  5'- aCCUCCGcCGACGUC-UCgCUGCuGAc -3'
miRNA:   3'- gGGAGGCcGUUGCAGuAG-GACGuCUa -5'
25534 3' -56.1 NC_005337.1 + 43839 0.66 0.856617
Target:  5'- gCCUCCGcGC-ACGaCcUCCUGCAGu- -3'
miRNA:   3'- gGGAGGC-CGuUGCaGuAGGACGUCua -5'
25534 3' -56.1 NC_005337.1 + 124947 0.66 0.856617
Target:  5'- uCCCUCCGGacgcagcuCGGCuGUCGUCCgUGCGu-- -3'
miRNA:   3'- -GGGAGGCC--------GUUG-CAGUAGG-ACGUcua -5'
25534 3' -56.1 NC_005337.1 + 107699 0.68 0.778594
Target:  5'- uCCC-CCGGCGACGUCGUCaC-GCu--- -3'
miRNA:   3'- -GGGaGGCCGUUGCAGUAG-GaCGucua -5'
25534 3' -56.1 NC_005337.1 + 122340 0.68 0.778594
Target:  5'- gUCUCCGGCcgggacGACGUCGgcaaCCUGCuGGg -3'
miRNA:   3'- gGGAGGCCG------UUGCAGUa---GGACGuCUa -5'
25534 3' -56.1 NC_005337.1 + 9606 0.69 0.740052
Target:  5'- gCCgCCGGCGuuUGUCAgcUCCUGCAGc- -3'
miRNA:   3'- gGGaGGCCGUu-GCAGU--AGGACGUCua -5'
25534 3' -56.1 NC_005337.1 + 78064 0.69 0.720165
Target:  5'- cCCCUCCGcCA----CGUCCUGCAGGUa -3'
miRNA:   3'- -GGGAGGCcGUugcaGUAGGACGUCUA- -5'
25534 3' -56.1 NC_005337.1 + 107722 0.72 0.545883
Target:  5'- gUCCUUCGGCAaggacgACGUCAgCCUgGCGGAc -3'
miRNA:   3'- -GGGAGGCCGU------UGCAGUaGGA-CGUCUa -5'
25534 3' -56.1 NC_005337.1 + 98303 0.72 0.535828
Target:  5'- gCCCUCCGGCGuCGaCAUCCgcUGCGcGAg -3'
miRNA:   3'- -GGGAGGCCGUuGCaGUAGG--ACGU-CUa -5'
25534 3' -56.1 NC_005337.1 + 89842 0.74 0.421655
Target:  5'- gUCCUCCGGCGGCGgcucccggCGcUCCgGCAGAc -3'
miRNA:   3'- -GGGAGGCCGUUGCa-------GU-AGGaCGUCUa -5'
25534 3' -56.1 NC_005337.1 + 115654 1.08 0.002682
Target:  5'- cCCCUCCGGCAACGUCAUCCUGCAGAUa -3'
miRNA:   3'- -GGGAGGCCGUUGCAGUAGGACGUCUA- -5'
25534 3' -56.1 NC_005337.1 + 50200 0.66 0.871863
Target:  5'- aCCCUCUGGCucCGcCGcCCUGCGc-- -3'
miRNA:   3'- -GGGAGGCCGuuGCaGUaGGACGUcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.