miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25534 3' -56.1 NC_005337.1 + 115654 1.08 0.002682
Target:  5'- cCCCUCCGGCAACGUCAUCCUGCAGAUa -3'
miRNA:   3'- -GGGAGGCCGUUGCAGUAGGACGUCUA- -5'
25534 3' -56.1 NC_005337.1 + 112753 0.78 0.267976
Target:  5'- cCCCUCCGGCuuuCGUCcggCCUGCGGc- -3'
miRNA:   3'- -GGGAGGCCGuu-GCAGua-GGACGUCua -5'
25534 3' -56.1 NC_005337.1 + 89842 0.74 0.421655
Target:  5'- gUCCUCCGGCGGCGgcucccggCGcUCCgGCAGAc -3'
miRNA:   3'- -GGGAGGCCGUUGCa-------GU-AGGaCGUCUa -5'
25534 3' -56.1 NC_005337.1 + 89999 0.73 0.496317
Target:  5'- gCUC-CCGGUGACGUCGUCCaGCAGc- -3'
miRNA:   3'- -GGGaGGCCGUUGCAGUAGGaCGUCua -5'
25534 3' -56.1 NC_005337.1 + 98303 0.72 0.535828
Target:  5'- gCCCUCCGGCGuCGaCAUCCgcUGCGcGAg -3'
miRNA:   3'- -GGGAGGCCGUuGCaGUAGG--ACGU-CUa -5'
25534 3' -56.1 NC_005337.1 + 107722 0.72 0.545883
Target:  5'- gUCCUUCGGCAaggacgACGUCAgCCUgGCGGAc -3'
miRNA:   3'- -GGGAGGCCGU------UGCAGUaGGA-CGUCUa -5'
25534 3' -56.1 NC_005337.1 + 73988 0.72 0.566166
Target:  5'- aCCgcgUgGGCGACGUCGUCC-GCGGGa -3'
miRNA:   3'- gGGa--GgCCGUUGCAGUAGGaCGUCUa -5'
25534 3' -56.1 NC_005337.1 + 65791 0.71 0.607244
Target:  5'- gCCC-CCGGUgcgcacCGUCAUgCUGCAGAa -3'
miRNA:   3'- -GGGaGGCCGuu----GCAGUAgGACGUCUa -5'
25534 3' -56.1 NC_005337.1 + 115274 0.69 0.720165
Target:  5'- gCgCUCUGGCGaacGCGUCGUCgaGCAGc- -3'
miRNA:   3'- -GgGAGGCCGU---UGCAGUAGgaCGUCua -5'
25534 3' -56.1 NC_005337.1 + 78064 0.69 0.720165
Target:  5'- cCCCUCCGcCA----CGUCCUGCAGGUa -3'
miRNA:   3'- -GGGAGGCcGUugcaGUAGGACGUCUA- -5'
25534 3' -56.1 NC_005337.1 + 2880 0.69 0.730152
Target:  5'- aCCagcguggCCGGCGGCGUCcggCUGCAGAc -3'
miRNA:   3'- -GGga-----GGCCGUUGCAGuagGACGUCUa -5'
25534 3' -56.1 NC_005337.1 + 9606 0.69 0.740052
Target:  5'- gCCgCCGGCGuuUGUCAgcUCCUGCAGc- -3'
miRNA:   3'- gGGaGGCCGUu-GCAGU--AGGACGUCua -5'
25534 3' -56.1 NC_005337.1 + 59273 0.68 0.749856
Target:  5'- gCCaCCGGgcgaaCAACGUCAUcaCCUGCGGGUc -3'
miRNA:   3'- gGGaGGCC-----GUUGCAGUA--GGACGUCUA- -5'
25534 3' -56.1 NC_005337.1 + 107699 0.68 0.778594
Target:  5'- uCCC-CCGGCGACGUCGUCaC-GCu--- -3'
miRNA:   3'- -GGGaGGCCGUUGCAGUAG-GaCGucua -5'
25534 3' -56.1 NC_005337.1 + 122340 0.68 0.778594
Target:  5'- gUCUCCGGCcgggacGACGUCGgcaaCCUGCuGGg -3'
miRNA:   3'- gGGAGGCCG------UUGCAGUa---GGACGuCUa -5'
25534 3' -56.1 NC_005337.1 + 19996 0.68 0.797098
Target:  5'- gUCCUCgGGCAGCa-CGUgCUGCGGGc -3'
miRNA:   3'- -GGGAGgCCGUUGcaGUAgGACGUCUa -5'
25534 3' -56.1 NC_005337.1 + 1358 0.68 0.797098
Target:  5'- -aCUCCGcGCucGCGUCAUCUgagcGCGGGUa -3'
miRNA:   3'- ggGAGGC-CGu-UGCAGUAGGa---CGUCUA- -5'
25534 3' -56.1 NC_005337.1 + 70901 0.67 0.806126
Target:  5'- gCCUCCGGaagccACGUCcugGUUCUGCAGc- -3'
miRNA:   3'- gGGAGGCCgu---UGCAG---UAGGACGUCua -5'
25534 3' -56.1 NC_005337.1 + 50237 0.67 0.806126
Target:  5'- gCUUUCCGGCAGCG-CA-CCaugGCGGAc -3'
miRNA:   3'- -GGGAGGCCGUUGCaGUaGGa--CGUCUa -5'
25534 3' -56.1 NC_005337.1 + 130449 0.67 0.814992
Target:  5'- uCCCUCCGaGCu-CGUCGaCCUGguGc- -3'
miRNA:   3'- -GGGAGGC-CGuuGCAGUaGGACguCua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.