Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25534 | 3' | -56.1 | NC_005337.1 | + | 59273 | 0.68 | 0.749856 |
Target: 5'- gCCaCCGGgcgaaCAACGUCAUcaCCUGCGGGUc -3' miRNA: 3'- gGGaGGCC-----GUUGCAGUA--GGACGUCUA- -5' |
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25534 | 3' | -56.1 | NC_005337.1 | + | 9606 | 0.69 | 0.740052 |
Target: 5'- gCCgCCGGCGuuUGUCAgcUCCUGCAGc- -3' miRNA: 3'- gGGaGGCCGUu-GCAGU--AGGACGUCua -5' |
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25534 | 3' | -56.1 | NC_005337.1 | + | 2880 | 0.69 | 0.730152 |
Target: 5'- aCCagcguggCCGGCGGCGUCcggCUGCAGAc -3' miRNA: 3'- -GGga-----GGCCGUUGCAGuagGACGUCUa -5' |
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25534 | 3' | -56.1 | NC_005337.1 | + | 78064 | 0.69 | 0.720165 |
Target: 5'- cCCCUCCGcCA----CGUCCUGCAGGUa -3' miRNA: 3'- -GGGAGGCcGUugcaGUAGGACGUCUA- -5' |
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25534 | 3' | -56.1 | NC_005337.1 | + | 115274 | 0.69 | 0.720165 |
Target: 5'- gCgCUCUGGCGaacGCGUCGUCgaGCAGc- -3' miRNA: 3'- -GgGAGGCCGU---UGCAGUAGgaCGUCua -5' |
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25534 | 3' | -56.1 | NC_005337.1 | + | 65791 | 0.71 | 0.607244 |
Target: 5'- gCCC-CCGGUgcgcacCGUCAUgCUGCAGAa -3' miRNA: 3'- -GGGaGGCCGuu----GCAGUAgGACGUCUa -5' |
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25534 | 3' | -56.1 | NC_005337.1 | + | 73988 | 0.72 | 0.566166 |
Target: 5'- aCCgcgUgGGCGACGUCGUCC-GCGGGa -3' miRNA: 3'- gGGa--GgCCGUUGCAGUAGGaCGUCUa -5' |
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25534 | 3' | -56.1 | NC_005337.1 | + | 107722 | 0.72 | 0.545883 |
Target: 5'- gUCCUUCGGCAaggacgACGUCAgCCUgGCGGAc -3' miRNA: 3'- -GGGAGGCCGU------UGCAGUaGGA-CGUCUa -5' |
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25534 | 3' | -56.1 | NC_005337.1 | + | 98303 | 0.72 | 0.535828 |
Target: 5'- gCCCUCCGGCGuCGaCAUCCgcUGCGcGAg -3' miRNA: 3'- -GGGAGGCCGUuGCaGUAGG--ACGU-CUa -5' |
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25534 | 3' | -56.1 | NC_005337.1 | + | 89999 | 0.73 | 0.496317 |
Target: 5'- gCUC-CCGGUGACGUCGUCCaGCAGc- -3' miRNA: 3'- -GGGaGGCCGUUGCAGUAGGaCGUCua -5' |
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25534 | 3' | -56.1 | NC_005337.1 | + | 89842 | 0.74 | 0.421655 |
Target: 5'- gUCCUCCGGCGGCGgcucccggCGcUCCgGCAGAc -3' miRNA: 3'- -GGGAGGCCGUUGCa-------GU-AGGaCGUCUa -5' |
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25534 | 3' | -56.1 | NC_005337.1 | + | 112753 | 0.78 | 0.267976 |
Target: 5'- cCCCUCCGGCuuuCGUCcggCCUGCGGc- -3' miRNA: 3'- -GGGAGGCCGuu-GCAGua-GGACGUCua -5' |
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25534 | 3' | -56.1 | NC_005337.1 | + | 115654 | 1.08 | 0.002682 |
Target: 5'- cCCCUCCGGCAACGUCAUCCUGCAGAUa -3' miRNA: 3'- -GGGAGGCCGUUGCAGUAGGACGUCUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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