miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25534 5' -51 NC_005337.1 + 82944 0.66 0.988593
Target:  5'- cGUAUggGgUCGGAgAGCGgCGUgGACu -3'
miRNA:   3'- -CGUGuuC-AGCCUgUUGCgGCAgUUGu -5'
25534 5' -51 NC_005337.1 + 83032 0.66 0.988593
Target:  5'- cGUACAcGgCGGACA---CCGUCAGCAu -3'
miRNA:   3'- -CGUGUuCaGCCUGUugcGGCAGUUGU- -5'
25534 5' -51 NC_005337.1 + 39384 0.66 0.988144
Target:  5'- uGCugAAcUCGGGCGagcgguuuccggagGCGCUGuUCGACAc -3'
miRNA:   3'- -CGugUUcAGCCUGU--------------UGCGGC-AGUUGU- -5'
25534 5' -51 NC_005337.1 + 115091 0.66 0.987043
Target:  5'- gGCAUcgugGAGUcCGGACacccgGugGCCGUCGccgACAu -3'
miRNA:   3'- -CGUG----UUCA-GCCUG-----UugCGGCAGU---UGU- -5'
25534 5' -51 NC_005337.1 + 112503 0.66 0.987043
Target:  5'- aGCACGGcGUCGaagaccucGCAGCGCUG-CGACAu -3'
miRNA:   3'- -CGUGUU-CAGCc-------UGUUGCGGCaGUUGU- -5'
25534 5' -51 NC_005337.1 + 30072 0.66 0.987043
Target:  5'- aCACGAGUCGGGCGcaggugcagGCGUCcucCAGCu -3'
miRNA:   3'- cGUGUUCAGCCUGU---------UGCGGca-GUUGu -5'
25534 5' -51 NC_005337.1 + 64801 0.66 0.987043
Target:  5'- cGCGCGg--CGGcACGACGCCGg-AACAc -3'
miRNA:   3'- -CGUGUucaGCC-UGUUGCGGCagUUGU- -5'
25534 5' -51 NC_005337.1 + 35163 0.67 0.985337
Target:  5'- cGCugGcggaguGGUCGGcgACGGCGUCGUCcGCc -3'
miRNA:   3'- -CGugU------UCAGCC--UGUUGCGGCAGuUGu -5'
25534 5' -51 NC_005337.1 + 25057 0.67 0.985337
Target:  5'- uGCGCGccGUgCGGGCGGCGuUCGUCAAg- -3'
miRNA:   3'- -CGUGUu-CA-GCCUGUUGC-GGCAGUUgu -5'
25534 5' -51 NC_005337.1 + 119729 0.67 0.985337
Target:  5'- cGCACGAGgaacucgCGGACAugGUgCGcCAgaGCAc -3'
miRNA:   3'- -CGUGUUCa------GCCUGUugCG-GCaGU--UGU- -5'
25534 5' -51 NC_005337.1 + 34735 0.67 0.985337
Target:  5'- cGCGCGagcAGUCGG-CGGCGCaccgggccgCGUCGucGCAg -3'
miRNA:   3'- -CGUGU---UCAGCCuGUUGCG---------GCAGU--UGU- -5'
25534 5' -51 NC_005337.1 + 26138 0.67 0.985337
Target:  5'- -gACGguuGUCGGACAccaccACGCCGacCAGCGu -3'
miRNA:   3'- cgUGUu--CAGCCUGU-----UGCGGCa-GUUGU- -5'
25534 5' -51 NC_005337.1 + 107344 0.67 0.985337
Target:  5'- cCACAAGggcgUGGGCGGCGUCucCAGCAc -3'
miRNA:   3'- cGUGUUCa---GCCUGUUGCGGcaGUUGU- -5'
25534 5' -51 NC_005337.1 + 6574 0.67 0.985337
Target:  5'- gGCGCAgaacccGGUCGcGGCcaccGGCGCCagGUCGGCGc -3'
miRNA:   3'- -CGUGU------UCAGC-CUG----UUGCGG--CAGUUGU- -5'
25534 5' -51 NC_005337.1 + 71726 0.67 0.985337
Target:  5'- -aGCAGGUgCGcGACGACGCgacgGUCAGCc -3'
miRNA:   3'- cgUGUUCA-GC-CUGUUGCGg---CAGUUGu -5'
25534 5' -51 NC_005337.1 + 122228 0.67 0.983465
Target:  5'- cGCGCAcGcCGGACGaccgcACGCCGaugacCGGCAu -3'
miRNA:   3'- -CGUGUuCaGCCUGU-----UGCGGCa----GUUGU- -5'
25534 5' -51 NC_005337.1 + 69973 0.67 0.983465
Target:  5'- cGCGCAAGacgcCGGACGcgacCGCCGU--GCAc -3'
miRNA:   3'- -CGUGUUCa---GCCUGUu---GCGGCAguUGU- -5'
25534 5' -51 NC_005337.1 + 76826 0.67 0.983465
Target:  5'- uGCGCAGG-CGGugGAUGCg--CAGCGc -3'
miRNA:   3'- -CGUGUUCaGCCugUUGCGgcaGUUGU- -5'
25534 5' -51 NC_005337.1 + 122950 0.67 0.983465
Target:  5'- ----cGGcCGcGACGACGCCGcCAACAa -3'
miRNA:   3'- cguguUCaGC-CUGUUGCGGCaGUUGU- -5'
25534 5' -51 NC_005337.1 + 104415 0.67 0.981417
Target:  5'- -gACGAGUCGGACAcCaCCGacuccugCAGCAa -3'
miRNA:   3'- cgUGUUCAGCCUGUuGcGGCa------GUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.