miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25536 3' -54.3 NC_005337.1 + 54086 0.66 0.939951
Target:  5'- --gCGCCcgCGGcaggaGCGCGUCCGcGCGccGGc -3'
miRNA:   3'- gaaGCGGuaGCU-----UGCGUAGGC-CGU--CC- -5'
25536 3' -54.3 NC_005337.1 + 87868 0.66 0.939951
Target:  5'- -aUCGCCAacaccCGggUGaCcUCgCGGCAGGa -3'
miRNA:   3'- gaAGCGGUa----GCuuGC-GuAG-GCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 97236 0.66 0.939474
Target:  5'- aCUUCGCCAacgacgaguucugUCGGGCGgugagCCGGCGc- -3'
miRNA:   3'- -GAAGCGGU-------------AGCUUGCgua--GGCCGUcc -5'
25536 3' -54.3 NC_005337.1 + 114722 0.66 0.939474
Target:  5'- --gCGCCcugauuaaggaguGUCuGACGUuggacuUCCGGCAGGg -3'
miRNA:   3'- gaaGCGG-------------UAGcUUGCGu-----AGGCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 48502 0.66 0.935579
Target:  5'- --aCGCCGUCGugaaguccguguacAACaGCAUCCgcuccgaggaggagcGGCGGGa -3'
miRNA:   3'- gaaGCGGUAGC--------------UUG-CGUAGG---------------CCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 72493 0.66 0.935081
Target:  5'- aCUUCGCCAaggUGAACGaGUUCGuGgAGGa -3'
miRNA:   3'- -GAAGCGGUa--GCUUGCgUAGGC-CgUCC- -5'
25536 3' -54.3 NC_005337.1 + 115065 0.66 0.935081
Target:  5'- --aCGCCGUcaCGGACGaCGUCUGcGUGGGc -3'
miRNA:   3'- gaaGCGGUA--GCUUGC-GUAGGC-CGUCC- -5'
25536 3' -54.3 NC_005337.1 + 93697 0.66 0.935081
Target:  5'- uCUUCGCCAgCGAGCG-GUCCauGG-AGGa -3'
miRNA:   3'- -GAAGCGGUaGCUUGCgUAGG--CCgUCC- -5'
25536 3' -54.3 NC_005337.1 + 87228 0.66 0.93458
Target:  5'- aCUUCGCCAggaUGAuggagauGCGCuuGUCCGuggagaGCAGGa -3'
miRNA:   3'- -GAAGCGGUa--GCU-------UGCG--UAGGC------CGUCC- -5'
25536 3' -54.3 NC_005337.1 + 15189 0.66 0.933572
Target:  5'- -gUCGCCGUCGAgggucAUGCAgUCCaGGCugcgacacaccgcgAGGa -3'
miRNA:   3'- gaAGCGGUAGCU-----UGCGU-AGG-CCG--------------UCC- -5'
25536 3' -54.3 NC_005337.1 + 20103 0.66 0.933572
Target:  5'- --cCGCCAUCagcgaGAGCGCGUCCuccaccgagaggucGGCgaAGGc -3'
miRNA:   3'- gaaGCGGUAG-----CUUGCGUAGG--------------CCG--UCC- -5'
25536 3' -54.3 NC_005337.1 + 83680 0.67 0.929968
Target:  5'- ---gGUCGUCGAuCGCGgUCUGGguGGc -3'
miRNA:   3'- gaagCGGUAGCUuGCGU-AGGCCguCC- -5'
25536 3' -54.3 NC_005337.1 + 10811 0.67 0.929968
Target:  5'- --cCGCUgcgUGGACGCcgCgGGCGGGu -3'
miRNA:   3'- gaaGCGGua-GCUUGCGuaGgCCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 79403 0.67 0.928916
Target:  5'- --aCGUCAgcuucugguagaUGAGCGCGUUCGGCAcGGg -3'
miRNA:   3'- gaaGCGGUa-----------GCUUGCGUAGGCCGU-CC- -5'
25536 3' -54.3 NC_005337.1 + 60620 0.67 0.926783
Target:  5'- -aUCGCCcacgCGAACGCGUCgugcucgagcucgaaCGGCAc- -3'
miRNA:   3'- gaAGCGGua--GCUUGCGUAG---------------GCCGUcc -5'
25536 3' -54.3 NC_005337.1 + 10175 0.67 0.92461
Target:  5'- -cUUGCCggCGAGCGCGaagacCUGGCGGc -3'
miRNA:   3'- gaAGCGGuaGCUUGCGUa----GGCCGUCc -5'
25536 3' -54.3 NC_005337.1 + 9971 0.67 0.92461
Target:  5'- --gCGCCGcgaCGAGgcCGCGUCCucggccacGGCAGGg -3'
miRNA:   3'- gaaGCGGUa--GCUU--GCGUAGG--------CCGUCC- -5'
25536 3' -54.3 NC_005337.1 + 98383 0.67 0.92461
Target:  5'- --aCGCUcgCGuACGCGUCCGcGCAc- -3'
miRNA:   3'- gaaGCGGuaGCuUGCGUAGGC-CGUcc -5'
25536 3' -54.3 NC_005337.1 + 58823 0.67 0.92461
Target:  5'- --gCGCCAgaucgUCGGGCGCG-CCGuGCGGc -3'
miRNA:   3'- gaaGCGGU-----AGCUUGCGUaGGC-CGUCc -5'
25536 3' -54.3 NC_005337.1 + 122203 0.67 0.92461
Target:  5'- -aUCGCCG-CGGGCGCGgacgugUCGGCGc- -3'
miRNA:   3'- gaAGCGGUaGCUUGCGUa-----GGCCGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.