miRNA display CGI


Results 21 - 40 of 154 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25536 5' -57.9 NC_005337.1 + 99121 0.66 0.821689
Target:  5'- cGCGaGCCGGCuCgucGCGCCGcucaucaugcucaAGGGCg -3'
miRNA:   3'- cCGCaUGGCCGuGa--UGCGGC-------------UCCUGa -5'
25536 5' -57.9 NC_005337.1 + 66908 0.66 0.821689
Target:  5'- cGGCGcacgaugUACuCGGUcauggGCUGCGCCaucgugGAGGGCg -3'
miRNA:   3'- -CCGC-------AUG-GCCG-----UGAUGCGG------CUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 131842 0.66 0.81402
Target:  5'- -aCGUACCuGCACUACGacggccccgaccCCGAGGuCg -3'
miRNA:   3'- ccGCAUGGcCGUGAUGC------------GGCUCCuGa -5'
25536 5' -57.9 NC_005337.1 + 127370 0.66 0.81402
Target:  5'- uGCGcGCCGGCGCggacccgcgcGCGCgCGAcauGGACg -3'
miRNA:   3'- cCGCaUGGCCGUGa---------UGCG-GCU---CCUGa -5'
25536 5' -57.9 NC_005337.1 + 63538 0.66 0.805347
Target:  5'- gGGCGUG-CGGCGCUcguuUGCC--GGACUg -3'
miRNA:   3'- -CCGCAUgGCCGUGAu---GCGGcuCCUGA- -5'
25536 5' -57.9 NC_005337.1 + 25435 0.66 0.805347
Target:  5'- cGGCGUGucgcCCGcGCGCUucgGCaCCGuGGACg -3'
miRNA:   3'- -CCGCAU----GGC-CGUGA---UGcGGCuCCUGa -5'
25536 5' -57.9 NC_005337.1 + 119015 0.66 0.805347
Target:  5'- cGCGUcGCCacaacguucGGCGCcgGCGCCGccAGGACc -3'
miRNA:   3'- cCGCA-UGG---------CCGUGa-UGCGGC--UCCUGa -5'
25536 5' -57.9 NC_005337.1 + 94035 0.66 0.805347
Target:  5'- uGGCGcgGCgCGGCGCg--GCCGAcGACUu -3'
miRNA:   3'- -CCGCa-UG-GCCGUGaugCGGCUcCUGA- -5'
25536 5' -57.9 NC_005337.1 + 47632 0.67 0.796521
Target:  5'- aGCGUcugcgcgccaccGCCgGGUACUACGUggugcacugcugCGAGGGCg -3'
miRNA:   3'- cCGCA------------UGG-CCGUGAUGCG------------GCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 58052 0.67 0.796521
Target:  5'- cGGCGUGCUcGC-CaACcCCGAGGACc -3'
miRNA:   3'- -CCGCAUGGcCGuGaUGcGGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 69247 0.67 0.796521
Target:  5'- uGGaCGUGCCGGUg--ACGCUGGugguGGGCUu -3'
miRNA:   3'- -CC-GCAUGGCCGugaUGCGGCU----CCUGA- -5'
25536 5' -57.9 NC_005337.1 + 54230 0.67 0.796521
Target:  5'- aGGCGUAgaucuccucguCCGGCGCguccGgGCCGGGuGCg -3'
miRNA:   3'- -CCGCAU-----------GGCCGUGa---UgCGGCUCcUGa -5'
25536 5' -57.9 NC_005337.1 + 77074 0.67 0.79563
Target:  5'- cGCGgGCgCGGCACccgUACGCCGAGuaggugcGGCa -3'
miRNA:   3'- cCGCaUG-GCCGUG---AUGCGGCUC-------CUGa -5'
25536 5' -57.9 NC_005337.1 + 123868 0.67 0.793845
Target:  5'- cGGCGgGCgCGGCGCgUACGgCCucgucuucauuccgGAGGGCg -3'
miRNA:   3'- -CCGCaUG-GCCGUG-AUGC-GG--------------CUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 101245 0.67 0.791155
Target:  5'- cGCGUGCucgcgcuggaCGGCGCggACGCgaagaucgcggccauCGAGGACa -3'
miRNA:   3'- cCGCAUG----------GCCGUGa-UGCG---------------GCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 108988 0.67 0.78755
Target:  5'- uGCucUGCCGGaCGCUG-GCCGAGGAg- -3'
miRNA:   3'- cCGc-AUGGCC-GUGAUgCGGCUCCUga -5'
25536 5' -57.9 NC_005337.1 + 96279 0.67 0.78755
Target:  5'- cGGCGUucCCGGCG--GCGuuGGGGuGCa -3'
miRNA:   3'- -CCGCAu-GGCCGUgaUGCggCUCC-UGa -5'
25536 5' -57.9 NC_005337.1 + 131795 0.67 0.78755
Target:  5'- cGCGUACCcgaaCAUagcCGCCGAGGACc -3'
miRNA:   3'- cCGCAUGGcc--GUGau-GCGGCUCCUGa -5'
25536 5' -57.9 NC_005337.1 + 56143 0.67 0.786645
Target:  5'- cGGCGUGCagcggggCGGCAaggccgACGCCGuaguccuGGACc -3'
miRNA:   3'- -CCGCAUG-------GCCGUga----UGCGGCu------CCUGa -5'
25536 5' -57.9 NC_005337.1 + 73146 0.67 0.778443
Target:  5'- aGGUGUACaCGGcCAUcAUGCCgGAGGAg- -3'
miRNA:   3'- -CCGCAUG-GCC-GUGaUGCGG-CUCCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.