miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25537 5' -63 NC_005337.1 + 56916 0.68 0.481074
Target:  5'- gCGGGAUCCggggcuaCUUCGG-GGACaGCGuGGCCu -3'
miRNA:   3'- -GCCCUAGG-------GGGGCCaCUUG-CGC-CCGG- -5'
25537 5' -63 NC_005337.1 + 40851 0.68 0.464167
Target:  5'- aCGGGAcacgcgucgccgUgCCCCCGGUgcaGAGgGC-GGCCg -3'
miRNA:   3'- -GCCCU------------AgGGGGGCCA---CUUgCGcCCGG- -5'
25537 5' -63 NC_005337.1 + 16998 0.68 0.464167
Target:  5'- gCGGGA-CCCCgCCGacucgucgGggUcuGCGGGCCg -3'
miRNA:   3'- -GCCCUaGGGG-GGCca------CuuG--CGCCCGG- -5'
25537 5' -63 NC_005337.1 + 102423 0.69 0.455395
Target:  5'- gGGGAcaUCCCCGaguacGUGAACGCGcucaucgcGGCCg -3'
miRNA:   3'- gCCCUagGGGGGC-----CACUUGCGC--------CCGG- -5'
25537 5' -63 NC_005337.1 + 128434 0.69 0.438123
Target:  5'- gGGGGUCCCCgCGGgcGGC-CGGGUa -3'
miRNA:   3'- gCCCUAGGGGgGCCacUUGcGCCCGg -5'
25537 5' -63 NC_005337.1 + 130516 0.69 0.429629
Target:  5'- uGGGAggUCauggaguUCCUGGUGcGCGCGGGCg -3'
miRNA:   3'- gCCCU--AGg------GGGGCCACuUGCGCCCGg -5'
25537 5' -63 NC_005337.1 + 28715 0.69 0.412937
Target:  5'- uCGGGGUCCgugugcguccugCCCCagcgGGUGGACGCGcuGCUg -3'
miRNA:   3'- -GCCCUAGG------------GGGG----CCACUUGCGCc-CGG- -5'
25537 5' -63 NC_005337.1 + 95559 0.69 0.412937
Target:  5'- cCGGuGUCCCCCgucaGGACGaCGGGCCg -3'
miRNA:   3'- -GCCcUAGGGGGgccaCUUGC-GCCCGG- -5'
25537 5' -63 NC_005337.1 + 35758 0.7 0.404741
Target:  5'- gCGGGcUCCCCCCGGccuugccgcgGAACuCGGGg- -3'
miRNA:   3'- -GCCCuAGGGGGGCCa---------CUUGcGCCCgg -5'
25537 5' -63 NC_005337.1 + 7712 0.7 0.39665
Target:  5'- aGGGAcUCCCUcuccgcuaCCGGUGAGC-CGGuaGCCg -3'
miRNA:   3'- gCCCU-AGGGG--------GGCCACUUGcGCC--CGG- -5'
25537 5' -63 NC_005337.1 + 118180 0.7 0.388663
Target:  5'- gGcGGAcccguucgagcUCgCgCCGGUGGGCGCGGaGCCg -3'
miRNA:   3'- gC-CCU-----------AGgGgGGCCACUUGCGCC-CGG- -5'
25537 5' -63 NC_005337.1 + 91211 0.7 0.388663
Target:  5'- aCGGGcgCgCCgCCGGUGGucaGCGCGuccauguggucGGCCa -3'
miRNA:   3'- -GCCCuaGgGG-GGCCACU---UGCGC-----------CCGG- -5'
25537 5' -63 NC_005337.1 + 34018 0.7 0.380783
Target:  5'- gCGGuaGGUgCUCCCGGUcAugGCGGGCg -3'
miRNA:   3'- -GCC--CUAgGGGGGCCAcUugCGCCCGg -5'
25537 5' -63 NC_005337.1 + 98999 0.7 0.37301
Target:  5'- gGuGGAgccgCCCCCCGaGgu-GCGCGcGGCCu -3'
miRNA:   3'- gC-CCUa---GGGGGGC-CacuUGCGC-CCGG- -5'
25537 5' -63 NC_005337.1 + 74597 0.71 0.350345
Target:  5'- uCGGGcUCUCCCgGGUcGugcuCGCGGGCg -3'
miRNA:   3'- -GCCCuAGGGGGgCCA-Cuu--GCGCCCGg -5'
25537 5' -63 NC_005337.1 + 49336 0.71 0.350345
Target:  5'- cCGGGAccugaUCUCCCUGGUGAAagaaaaaauCGCGGaggcggcgaccGCCg -3'
miRNA:   3'- -GCCCU-----AGGGGGGCCACUU---------GCGCC-----------CGG- -5'
25537 5' -63 NC_005337.1 + 36721 0.72 0.304005
Target:  5'- gCGaGGAUCUUCUCGGUGAAgacgugguacuuguuCuGCGGGCCc -3'
miRNA:   3'- -GC-CCUAGGGGGGCCACUU---------------G-CGCCCGG- -5'
25537 5' -63 NC_005337.1 + 60807 0.72 0.275814
Target:  5'- uGGGGUCCUCCgCGG-GcACGCGGcaccGCCg -3'
miRNA:   3'- gCCCUAGGGGG-GCCaCuUGCGCC----CGG- -5'
25537 5' -63 NC_005337.1 + 14590 0.73 0.248618
Target:  5'- cCGGGAagccuUCCCUuguacaggucggucuCCGGUGAcUGCGGGCa -3'
miRNA:   3'- -GCCCU-----AGGGG---------------GGCCACUuGCGCCCGg -5'
25537 5' -63 NC_005337.1 + 98042 0.74 0.224716
Target:  5'- uGGGGUUCgUCCGG-GAGCGCGccgcGGCCg -3'
miRNA:   3'- gCCCUAGGgGGGCCaCUUGCGC----CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.