miRNA display CGI


Results 21 - 40 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25538 5' -54.9 NC_005337.1 + 93724 0.66 0.937105
Target:  5'- --cGACGcgGCCUCCAgCgac-CCGCCg -3'
miRNA:   3'- gguCUGCa-UGGAGGUgGagaaGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 57684 0.66 0.932146
Target:  5'- gCAGcCGUggACCUCCACCaugaugcagUUCgCGCCg -3'
miRNA:   3'- gGUCuGCA--UGGAGGUGGag-------AAG-GCGG- -5'
25538 5' -54.9 NC_005337.1 + 33921 0.66 0.932146
Target:  5'- uUCAGGCGcccCCgagCGCCUUcacgUCCGCCa -3'
miRNA:   3'- -GGUCUGCau-GGag-GUGGAGa---AGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 114826 0.66 0.932146
Target:  5'- gCAGGCGUACCggcacuaCGCCgaggaCUaccUCCGCg -3'
miRNA:   3'- gGUCUGCAUGGag-----GUGGa----GA---AGGCGg -5'
25538 5' -54.9 NC_005337.1 + 74169 0.66 0.932146
Target:  5'- cUCGGACauGUGCaagUCCGCCUg-UCCGCa -3'
miRNA:   3'- -GGUCUG--CAUGg--AGGUGGAgaAGGCGg -5'
25538 5' -54.9 NC_005337.1 + 83902 0.66 0.926948
Target:  5'- gCCAGGCGcccgUGCCcgggCC-CgUC-UCCGCCg -3'
miRNA:   3'- -GGUCUGC----AUGGa---GGuGgAGaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 45987 0.66 0.926948
Target:  5'- gCUuGAUGUccGCCUCCACCgacaugUCCGgCa -3'
miRNA:   3'- -GGuCUGCA--UGGAGGUGGaga---AGGCgG- -5'
25538 5' -54.9 NC_005337.1 + 95961 0.66 0.926415
Target:  5'- gCCGG-CGUgucgaucACCUCCACCUUggacacggagUCCcCCa -3'
miRNA:   3'- -GGUCuGCA-------UGGAGGUGGAGa---------AGGcGG- -5'
25538 5' -54.9 NC_005337.1 + 18953 0.66 0.925879
Target:  5'- gCCGGGCGU-CCgagcacgguguaCCACCg--UCCGUCg -3'
miRNA:   3'- -GGUCUGCAuGGa-----------GGUGGagaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 13618 0.67 0.923714
Target:  5'- gCCGGGCGUcGCCgccgagggacagggCCACCUCcUCgaucgugaCGCCc -3'
miRNA:   3'- -GGUCUGCA-UGGa-------------GGUGGAGaAG--------GCGG- -5'
25538 5' -54.9 NC_005337.1 + 7230 0.67 0.921511
Target:  5'- uUCGGuGCGcACCUCCGCgC-CcgCCGCCa -3'
miRNA:   3'- -GGUC-UGCaUGGAGGUG-GaGaaGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 69123 0.67 0.921511
Target:  5'- gCGGGCGaGCCgcggUCCACggCggCCGCCu -3'
miRNA:   3'- gGUCUGCaUGG----AGGUGgaGaaGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 8442 0.67 0.921511
Target:  5'- --uGAUGUA-CUCCGCUUCa-CCGCCg -3'
miRNA:   3'- gguCUGCAUgGAGGUGGAGaaGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 64440 0.67 0.921511
Target:  5'- gCCaAGGCGcugAUCUgCGCCUCUgUCCGgCa -3'
miRNA:   3'- -GG-UCUGCa--UGGAgGUGGAGA-AGGCgG- -5'
25538 5' -54.9 NC_005337.1 + 8704 0.67 0.921511
Target:  5'- gUAGAUGUACCUggCCAgCacgCUUCUGCa -3'
miRNA:   3'- gGUCUGCAUGGA--GGUgGa--GAAGGCGg -5'
25538 5' -54.9 NC_005337.1 + 84964 0.67 0.920954
Target:  5'- gCUGGAUG-GCCUCCagguaucGCCgg-UCCGCCc -3'
miRNA:   3'- -GGUCUGCaUGGAGG-------UGGagaAGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 33189 0.67 0.919833
Target:  5'- gCCGGACGggcCCUCCcgacggcggggcgcGCCUCUcagaggagUUCGCg -3'
miRNA:   3'- -GGUCUGCau-GGAGG--------------UGGAGA--------AGGCGg -5'
25538 5' -54.9 NC_005337.1 + 97716 0.67 0.915835
Target:  5'- gCCGGugGgguggcucGCCggcgCCGCC-CagCCGCCg -3'
miRNA:   3'- -GGUCugCa-------UGGa---GGUGGaGaaGGCGG- -5'
25538 5' -54.9 NC_005337.1 + 94275 0.67 0.915835
Target:  5'- gCGGAUGgccuccgugGCCUCCugCgUCaUCaCGCCg -3'
miRNA:   3'- gGUCUGCa--------UGGAGGugG-AGaAG-GCGG- -5'
25538 5' -54.9 NC_005337.1 + 35247 0.67 0.915835
Target:  5'- aCCuGGCGU-CCagCGCCUCgcaggCCGCg -3'
miRNA:   3'- -GGuCUGCAuGGagGUGGAGaa---GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.