miRNA display CGI


Results 21 - 40 of 122 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 3' -57.7 NC_005337.1 + 83224 0.66 0.773606
Target:  5'- uGAGCACguUGCCGGUGGAgcuaggacugcUGgAGCcGGAg -3'
miRNA:   3'- -CUCGUG--GCGGUCGCCU-----------ACgUCGuUCU- -5'
25539 3' -57.7 NC_005337.1 + 25721 0.66 0.773606
Target:  5'- -cGCGCCGCCAGCGucagGCGcGCGc-- -3'
miRNA:   3'- cuCGUGGCGGUCGCcua-CGU-CGUucu -5'
25539 3' -57.7 NC_005337.1 + 64143 0.66 0.773606
Target:  5'- aAGCACCuGUCccuGaCGGAggGCGGCGAGGa -3'
miRNA:   3'- cUCGUGG-CGGu--C-GCCUa-CGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 1051 0.66 0.773606
Target:  5'- cGGGCGgCgggagGCCGGCGGggGCGgacuGCGGGAc -3'
miRNA:   3'- -CUCGUgG-----CGGUCGCCuaCGU----CGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 88263 0.66 0.773606
Target:  5'- cGGCG-CGCCGGCGGgcGCcGCGgaGGAc -3'
miRNA:   3'- cUCGUgGCGGUCGCCuaCGuCGU--UCU- -5'
25539 3' -57.7 NC_005337.1 + 13392 0.66 0.770756
Target:  5'- uGGGCACCguGCgGGCGGAgcgauggagcuuuuUGCGGuCGAGc -3'
miRNA:   3'- -CUCGUGG--CGgUCGCCU--------------ACGUC-GUUCu -5'
25539 3' -57.7 NC_005337.1 + 75305 0.66 0.764061
Target:  5'- cGAGCuCCGCCaggAGCGGGUacuccGuCAGCuGGAg -3'
miRNA:   3'- -CUCGuGGCGG---UCGCCUA-----C-GUCGuUCU- -5'
25539 3' -57.7 NC_005337.1 + 82549 0.66 0.764061
Target:  5'- cAGCGCCGCaAGuUGGuGUGCAGCAcGGc -3'
miRNA:   3'- cUCGUGGCGgUC-GCC-UACGUCGUuCU- -5'
25539 3' -57.7 NC_005337.1 + 25097 0.66 0.764061
Target:  5'- cGAGCuCCGCCcGCGcGgcGCGGCGcgcgcGGAc -3'
miRNA:   3'- -CUCGuGGCGGuCGC-CuaCGUCGU-----UCU- -5'
25539 3' -57.7 NC_005337.1 + 43267 0.66 0.754395
Target:  5'- cGAGCGCCGCCAGCauccgGCuGGUAAc- -3'
miRNA:   3'- -CUCGUGGCGGUCGccua-CG-UCGUUcu -5'
25539 3' -57.7 NC_005337.1 + 3598 0.66 0.754395
Target:  5'- cAGCGCCcCCAGCGGc-GUAGCGccguAGAc -3'
miRNA:   3'- cUCGUGGcGGUCGCCuaCGUCGU----UCU- -5'
25539 3' -57.7 NC_005337.1 + 44295 0.66 0.754395
Target:  5'- gGAGCACCGacgaguCCuGCGuGA-GCAGCAAcGAg -3'
miRNA:   3'- -CUCGUGGC------GGuCGC-CUaCGUCGUU-CU- -5'
25539 3' -57.7 NC_005337.1 + 6856 0.66 0.754395
Target:  5'- cGGCACgguCGCCAG-GuGGUGCAGCAGc- -3'
miRNA:   3'- cUCGUG---GCGGUCgC-CUACGUCGUUcu -5'
25539 3' -57.7 NC_005337.1 + 99884 0.66 0.751473
Target:  5'- gGAGCACCGCCAcgcuccucuggcucGCcGcgGCGGCGc-- -3'
miRNA:   3'- -CUCGUGGCGGU--------------CGcCuaCGUCGUucu -5'
25539 3' -57.7 NC_005337.1 + 5584 0.67 0.744619
Target:  5'- -cGCGUCGCCAGCGcGcGUGCccGGCGGGGg -3'
miRNA:   3'- cuCGUGGCGGUCGC-C-UACG--UCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 62949 0.67 0.744619
Target:  5'- -uGCACCGCCGccgcGCGGGUcGCcGCcgacGAGAa -3'
miRNA:   3'- cuCGUGGCGGU----CGCCUA-CGuCG----UUCU- -5'
25539 3' -57.7 NC_005337.1 + 8456 0.67 0.744619
Target:  5'- --uCACCGCCGaUGuGcgGCAGCAGGAa -3'
miRNA:   3'- cucGUGGCGGUcGC-CuaCGUCGUUCU- -5'
25539 3' -57.7 NC_005337.1 + 64232 0.67 0.744619
Target:  5'- cGGGCAgCGCCucuuuGCGGcgcUGCGGCGGc- -3'
miRNA:   3'- -CUCGUgGCGGu----CGCCu--ACGUCGUUcu -5'
25539 3' -57.7 NC_005337.1 + 95583 0.67 0.734741
Target:  5'- cGGGCAguCCgggGUCGGcCGGGUGCAGCAGc- -3'
miRNA:   3'- -CUCGU--GG---CGGUC-GCCUACGUCGUUcu -5'
25539 3' -57.7 NC_005337.1 + 34314 0.67 0.724772
Target:  5'- ---uGCCGCUAGCGGAggaucgagGaCAGCAGGu -3'
miRNA:   3'- cucgUGGCGGUCGCCUa-------C-GUCGUUCu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.