miRNA display CGI


Results 21 - 40 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25539 5' -58.2 NC_005337.1 + 85642 0.66 0.768604
Target:  5'- gCGCGcugGCGuCCGCCgagcacauguucUGCACAGAcaCGCUg -3'
miRNA:   3'- -GCGU---UGC-GGCGG------------ACGUGUCUacGCGA- -5'
25539 5' -58.2 NC_005337.1 + 77190 0.66 0.768604
Target:  5'- aGCGuCGCCGUCUcGCGCGuGAUccgcacGCGCg -3'
miRNA:   3'- gCGUuGCGGCGGA-CGUGU-CUA------CGCGa -5'
25539 5' -58.2 NC_005337.1 + 124011 0.66 0.768604
Target:  5'- aCGCGcCGCCGCCgauggagGCGCcccgcgaaGGccGCGCg -3'
miRNA:   3'- -GCGUuGCGGCGGa------CGUG--------UCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 60743 0.66 0.768604
Target:  5'- gCGCGGauguacucgagUGCCGCCU-CGCGGGUGCccaGCa -3'
miRNA:   3'- -GCGUU-----------GCGGCGGAcGUGUCUACG---CGa -5'
25539 5' -58.2 NC_005337.1 + 11161 0.66 0.768604
Target:  5'- cCGCAcgACGUgcuCGCCgUGC-CAGAacUGCGCg -3'
miRNA:   3'- -GCGU--UGCG---GCGG-ACGuGUCU--ACGCGa -5'
25539 5' -58.2 NC_005337.1 + 39425 0.66 0.767658
Target:  5'- aCGCGcggGCGCCcgcucggGCC-GCGCucGGUGCGCa -3'
miRNA:   3'- -GCGU---UGCGG-------CGGaCGUGu-CUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 64650 0.66 0.75909
Target:  5'- uCGCGGCGUccauguccaCGUCgGCGaAGAUGCGCa -3'
miRNA:   3'- -GCGUUGCG---------GCGGaCGUgUCUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 130887 0.66 0.75909
Target:  5'- gGCAacACGCCG-CUGCACcucauGGccGCGCa -3'
miRNA:   3'- gCGU--UGCGGCgGACGUG-----UCuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 50207 0.66 0.75909
Target:  5'- gGCucCGCCGcCCUGCGCcuccccgagGGcgucGUGCGCg -3'
miRNA:   3'- gCGuuGCGGC-GGACGUG---------UC----UACGCGa -5'
25539 5' -58.2 NC_005337.1 + 74708 0.66 0.75909
Target:  5'- gGCAu--CCGCC-GCGacCAGAUGCGCa -3'
miRNA:   3'- gCGUugcGGCGGaCGU--GUCUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 40530 0.66 0.75909
Target:  5'- gGCAugcaGCCGCCgcgGCGCGcgguGGUGCGg- -3'
miRNA:   3'- gCGUug--CGGCGGa--CGUGU----CUACGCga -5'
25539 5' -58.2 NC_005337.1 + 51692 0.66 0.75909
Target:  5'- gGCGAgGCCagucugGCCUGCgACGGcgacGCGCUg -3'
miRNA:   3'- gCGUUgCGG------CGGACG-UGUCua--CGCGA- -5'
25539 5' -58.2 NC_005337.1 + 99019 0.66 0.75909
Target:  5'- uGC-GCGCgGCCUGCGag---GCGCUg -3'
miRNA:   3'- gCGuUGCGgCGGACGUgucuaCGCGA- -5'
25539 5' -58.2 NC_005337.1 + 126062 0.66 0.75909
Target:  5'- aCGCGACccuuGCCGaCCUGgACgAGGUGaCGCc -3'
miRNA:   3'- -GCGUUG----CGGC-GGACgUG-UCUAC-GCGa -5'
25539 5' -58.2 NC_005337.1 + 104488 0.66 0.75909
Target:  5'- gCGCGGCGCUGCUacGCGCuc--GCGCa -3'
miRNA:   3'- -GCGUUGCGGCGGa-CGUGucuaCGCGa -5'
25539 5' -58.2 NC_005337.1 + 80675 0.66 0.75909
Target:  5'- gCGCGGCG-CGCUUccgcgcGCGCAuGUGCGCg -3'
miRNA:   3'- -GCGUUGCgGCGGA------CGUGUcUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 128036 0.66 0.75909
Target:  5'- aGCGACGCUGaCUcGCGCGGGgacaCGCUg -3'
miRNA:   3'- gCGUUGCGGC-GGaCGUGUCUac--GCGA- -5'
25539 5' -58.2 NC_005337.1 + 104552 0.66 0.75909
Target:  5'- cCGCAACaCCGC--GCGCGcGUGCGCg -3'
miRNA:   3'- -GCGUUGcGGCGgaCGUGUcUACGCGa -5'
25539 5' -58.2 NC_005337.1 + 35559 0.66 0.749463
Target:  5'- gCGCAggGCGCCGCgCga-GCGGAUGC-CUa -3'
miRNA:   3'- -GCGU--UGCGGCG-GacgUGUCUACGcGA- -5'
25539 5' -58.2 NC_005337.1 + 77387 0.66 0.749463
Target:  5'- cCGCAACaCCaGCCgGCGCcgcgggagguGGAUGUGCg -3'
miRNA:   3'- -GCGUUGcGG-CGGaCGUG----------UCUACGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.