miRNA display CGI


Results 21 - 40 of 251 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25540 5' -53.5 NC_005337.1 + 49982 0.66 0.958056
Target:  5'- uGGCUcACGG--AGAAGGugAUGGUg -3'
miRNA:   3'- uCCGGcUGCUuuUCUUCCugUGCCGg -5'
25540 5' -53.5 NC_005337.1 + 52652 0.66 0.958056
Target:  5'- -uGCUGACcauGGAGGAGGcCAUGGCg -3'
miRNA:   3'- ucCGGCUGcu-UUUCUUCCuGUGCCGg -5'
25540 5' -53.5 NC_005337.1 + 37134 0.66 0.958056
Target:  5'- uAGGa-GACGAc--GAAGGGCACGcGCa -3'
miRNA:   3'- -UCCggCUGCUuuuCUUCCUGUGC-CGg -5'
25540 5' -53.5 NC_005337.1 + 101262 0.66 0.958056
Target:  5'- cGGcGCgGACGcGAAGAu---CGCGGCCa -3'
miRNA:   3'- -UC-CGgCUGCuUUUCUuccuGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 82075 0.66 0.958056
Target:  5'- gGGGCgUGAUGu--AGc-GGACGCGGUCg -3'
miRNA:   3'- -UCCG-GCUGCuuuUCuuCCUGUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 42806 0.66 0.958056
Target:  5'- uGG-CGGCGcacGAGAGccGGAUaACGGCCa -3'
miRNA:   3'- uCCgGCUGC---UUUUCuuCCUG-UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 57860 0.66 0.95417
Target:  5'- -cGCUGACc--AAGGAGGACGgGcGCCa -3'
miRNA:   3'- ucCGGCUGcuuUUCUUCCUGUgC-CGG- -5'
25540 5' -53.5 NC_005337.1 + 121838 0.66 0.95417
Target:  5'- cGGCCGACGugcucguGAAGucGGugGgcGCCa -3'
miRNA:   3'- uCCGGCUGCu------UUUCuuCCugUgcCGG- -5'
25540 5' -53.5 NC_005337.1 + 100697 0.66 0.95417
Target:  5'- cGGCCGACGc-------GACGCGGCg -3'
miRNA:   3'- uCCGGCUGCuuuucuucCUGUGCCGg -5'
25540 5' -53.5 NC_005337.1 + 79347 0.66 0.95417
Target:  5'- gAGGuuGGCGggGuccuGGuacaccuccAGGA-GCGGCCa -3'
miRNA:   3'- -UCCggCUGCuuUu---CU---------UCCUgUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 95377 0.66 0.95417
Target:  5'- -uGCCGACGAAGcccagcgaccgcAGGuAGGuCGCGGUg -3'
miRNA:   3'- ucCGGCUGCUUU------------UCU-UCCuGUGCCGg -5'
25540 5' -53.5 NC_005337.1 + 61985 0.66 0.95417
Target:  5'- cGG-CGACGcAGAgagcagcaGGAAGGGCACGcGCg -3'
miRNA:   3'- uCCgGCUGC-UUU--------UCUUCCUGUGC-CGg -5'
25540 5' -53.5 NC_005337.1 + 96468 0.66 0.95417
Target:  5'- gAGGCCguGACGcu-GGAGuGGAC-CGuGCCg -3'
miRNA:   3'- -UCCGG--CUGCuuuUCUU-CCUGuGC-CGG- -5'
25540 5' -53.5 NC_005337.1 + 5826 0.66 0.95417
Target:  5'- cGGuCCGGCGGuguGAAGu--GCGGCCg -3'
miRNA:   3'- uCC-GGCUGCUuuuCUUCcugUGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 123276 0.66 0.95417
Target:  5'- cAGGCCuggGACGAGcAGcuGGugGCGaCCg -3'
miRNA:   3'- -UCCGG---CUGCUUuUCuuCCugUGCcGG- -5'
25540 5' -53.5 NC_005337.1 + 75635 0.66 0.95417
Target:  5'- cGGGCCGuCGu---GAuGGGCGCGuCCg -3'
miRNA:   3'- -UCCGGCuGCuuuuCUuCCUGUGCcGG- -5'
25540 5' -53.5 NC_005337.1 + 64161 0.66 0.95255
Target:  5'- gAGGgCGGCGAGGAGAugcgcguuaaguucGugggcaaGGACAgGGUCg -3'
miRNA:   3'- -UCCgGCUGCUUUUCU--------------U-------CCUGUgCCGG- -5'
25540 5' -53.5 NC_005337.1 + 93255 0.66 0.950048
Target:  5'- cGGCUgguGGCGGGccucAAGcGGGACAUccuGGCCg -3'
miRNA:   3'- uCCGG---CUGCUU----UUCuUCCUGUG---CCGG- -5'
25540 5' -53.5 NC_005337.1 + 122777 0.66 0.950048
Target:  5'- uGGCCG-CGGAucau-GGACgcguugcugcgcGCGGCCa -3'
miRNA:   3'- uCCGGCuGCUUuucuuCCUG------------UGCCGG- -5'
25540 5' -53.5 NC_005337.1 + 6489 0.66 0.950048
Target:  5'- -cGCgGACGAGGAGGucGAUcgGCGGCUu -3'
miRNA:   3'- ucCGgCUGCUUUUCUucCUG--UGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.