Results 21 - 38 of 38 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 47588 | 0.68 | 0.898852 |
Target: 5'- gUACUUCAACGagggCCUGGAggccgacuuCGAGGcggacaacaAGCGu -3' miRNA: 3'- -AUGAAGUUGCa---GGACCU---------GCUCC---------UCGU- -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 114439 | 0.68 | 0.892061 |
Target: 5'- ----aCGACGUCC-GGcucauCGAGGAGCGg -3' miRNA: 3'- augaaGUUGCAGGaCCu----GCUCCUCGU- -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 25959 | 0.69 | 0.85455 |
Target: 5'- gUACUUCGcccgcGCGUCCaGGA--AGGAGCGc -3' miRNA: 3'- -AUGAAGU-----UGCAGGaCCUgcUCCUCGU- -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 66184 | 0.69 | 0.846376 |
Target: 5'- cACcgCcGCGUCCgggGcGACGGGGAGCu -3' miRNA: 3'- aUGaaGuUGCAGGa--C-CUGCUCCUCGu -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 94701 | 0.69 | 0.846376 |
Target: 5'- aUAC-UCGGCGUCCacgaGGACGAGuacccGAGCGc -3' miRNA: 3'- -AUGaAGUUGCAGGa---CCUGCUC-----CUCGU- -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 106985 | 0.69 | 0.837995 |
Target: 5'- aGCUUCuGCGUCgUGGACaAGGcgGGCGc -3' miRNA: 3'- aUGAAGuUGCAGgACCUGcUCC--UCGU- -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 92673 | 0.69 | 0.837995 |
Target: 5'- cUGCUUCGACGugcucaccuUCCUGGGCG-GcGGCGa -3' miRNA: 3'- -AUGAAGUUGC---------AGGACCUGCuCcUCGU- -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 123894 | 0.69 | 0.829412 |
Target: 5'- -uCUUCAu--UCCggaGGGCGAGGAGCGg -3' miRNA: 3'- auGAAGUugcAGGa--CCUGCUCCUCGU- -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 97274 | 0.69 | 0.820639 |
Target: 5'- cGCUUCGACGUgCUGGugcucgACGAGucGCAc -3' miRNA: 3'- aUGAAGUUGCAgGACC------UGCUCcuCGU- -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 115511 | 0.7 | 0.793254 |
Target: 5'- cGCgaggUCGACGaCCUGGAgGAGG-GCu -3' miRNA: 3'- aUGa---AGUUGCaGGACCUgCUCCuCGu -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 37693 | 0.71 | 0.764472 |
Target: 5'- gGCggCGGCGUCCaGGACGccGAGCu -3' miRNA: 3'- aUGaaGUUGCAGGaCCUGCucCUCGu -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 39041 | 0.71 | 0.764472 |
Target: 5'- cGCUUCGACaccguuGUCgUGGACGAGauccacGAGCAc -3' miRNA: 3'- aUGAAGUUG------CAGgACCUGCUC------CUCGU- -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 25020 | 0.71 | 0.744639 |
Target: 5'- cGCUUCGACGUgCgcgcggcGGAcacCGAGGAGCu -3' miRNA: 3'- aUGAAGUUGCAgGa------CCU---GCUCCUCGu -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 7455 | 0.71 | 0.714125 |
Target: 5'- cACgUCGGCGUCCgugGcGACGAGGGcGCGc -3' miRNA: 3'- aUGaAGUUGCAGGa--C-CUGCUCCU-CGU- -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 92595 | 0.72 | 0.707933 |
Target: 5'- gUGCUUCGACGaCgUGGACGuccgcgccuucgccaAGGAGCu -3' miRNA: 3'- -AUGAAGUUGCaGgACCUGC---------------UCCUCGu -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 4335 | 0.72 | 0.682938 |
Target: 5'- ---gUCGGCGcCCUGGACGAuGAGCu -3' miRNA: 3'- augaAGUUGCaGGACCUGCUcCUCGu -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 57531 | 0.72 | 0.67244 |
Target: 5'- -cCUUCAACGUUCUGGuCaAGGAGUg -3' miRNA: 3'- auGAAGUUGCAGGACCuGcUCCUCGu -5' |
|||||||
25541 | 3' | -53.5 | NC_005337.1 | + | 113229 | 1.07 | 0.005433 |
Target: 5'- gUACUUCAACGUCCUGGACGAGGAGCAc -3' miRNA: 3'- -AUGAAGUUGCAGGACCUGCUCCUCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home