miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25542 3' -55.3 NC_005337.1 + 75930 0.66 0.921907
Target:  5'- ---aGAGCGCGGCCaCGGucUCGUCGu -3'
miRNA:   3'- cuugUUCGCGUCGGaGCUccAGCAGC- -5'
25542 3' -55.3 NC_005337.1 + 19117 0.66 0.921907
Target:  5'- -cGCGGGCGcCGGCauCUCcAGGUgGUCGa -3'
miRNA:   3'- cuUGUUCGC-GUCG--GAGcUCCAgCAGC- -5'
25542 3' -55.3 NC_005337.1 + 79088 0.66 0.921907
Target:  5'- gGAACAcGCGCAuGCCcacCGGcacGUCGUCGa -3'
miRNA:   3'- -CUUGUuCGCGU-CGGa--GCUc--CAGCAGC- -5'
25542 3' -55.3 NC_005337.1 + 42401 0.66 0.921907
Target:  5'- -cGCGGcGCGCGGCCUCGcuGUgCGcCGg -3'
miRNA:   3'- cuUGUU-CGCGUCGGAGCucCA-GCaGC- -5'
25542 3' -55.3 NC_005337.1 + 21759 0.66 0.921907
Target:  5'- -cACAuGuCGCAGCgCUgCGAGGUCuUCGa -3'
miRNA:   3'- cuUGUuC-GCGUCG-GA-GCUCCAGcAGC- -5'
25542 3' -55.3 NC_005337.1 + 89942 0.66 0.916174
Target:  5'- ----cAGCGCGGCgUUGAuGG-CGUCGg -3'
miRNA:   3'- cuuguUCGCGUCGgAGCU-CCaGCAGC- -5'
25542 3' -55.3 NC_005337.1 + 39648 0.66 0.916174
Target:  5'- -cGCAgcGGCGCGGCCgcgUGGGGcgCGUgGc -3'
miRNA:   3'- cuUGU--UCGCGUCGGa--GCUCCa-GCAgC- -5'
25542 3' -55.3 NC_005337.1 + 16999 0.66 0.915587
Target:  5'- cGAACAuaucgGGCGgGGCCUCGAcGUCcagcgcgcacugcGUCGc -3'
miRNA:   3'- -CUUGU-----UCGCgUCGGAGCUcCAG-------------CAGC- -5'
25542 3' -55.3 NC_005337.1 + 49099 0.66 0.910197
Target:  5'- -----cGCGCAGCUcgugcgCGAGGUCaUCGa -3'
miRNA:   3'- cuuguuCGCGUCGGa-----GCUCCAGcAGC- -5'
25542 3' -55.3 NC_005337.1 + 97513 0.66 0.910197
Target:  5'- aAACAuggcGCGCAGCCUgGAGGgccCG-Ca -3'
miRNA:   3'- cUUGUu---CGCGUCGGAgCUCCa--GCaGc -5'
25542 3' -55.3 NC_005337.1 + 11940 0.66 0.907739
Target:  5'- --cCGGGCGCGcGCCgUCGAGGgacgcgcauaucgCGUCa -3'
miRNA:   3'- cuuGUUCGCGU-CGG-AGCUCCa------------GCAGc -5'
25542 3' -55.3 NC_005337.1 + 104657 0.66 0.903979
Target:  5'- cAGCGaagGGCGCGuGCC-CaAGGUCGUCa -3'
miRNA:   3'- cUUGU---UCGCGU-CGGaGcUCCAGCAGc -5'
25542 3' -55.3 NC_005337.1 + 128424 0.66 0.89752
Target:  5'- -cGCAGcCGCAgGCCagCGAGGUCG-CGg -3'
miRNA:   3'- cuUGUUcGCGU-CGGa-GCUCCAGCaGC- -5'
25542 3' -55.3 NC_005337.1 + 68101 0.66 0.89752
Target:  5'- cGGACGcGGCGguGgucguaCUCGGGGUCG-CGg -3'
miRNA:   3'- -CUUGU-UCGCguCg-----GAGCUCCAGCaGC- -5'
25542 3' -55.3 NC_005337.1 + 12614 0.66 0.89752
Target:  5'- uGAGCAGGUcCAcGaCCUCGGGGgucgccgCGUCGu -3'
miRNA:   3'- -CUUGUUCGcGU-C-GGAGCUCCa------GCAGC- -5'
25542 3' -55.3 NC_005337.1 + 19613 0.66 0.89752
Target:  5'- ---aGAG-GCGGCCUCGAGGcccgCGUUc -3'
miRNA:   3'- cuugUUCgCGUCGGAGCUCCa---GCAGc -5'
25542 3' -55.3 NC_005337.1 + 62160 0.66 0.890824
Target:  5'- cGAugGGGaUGCGgacGCCgUCGAGGUCGUa- -3'
miRNA:   3'- -CUugUUC-GCGU---CGG-AGCUCCAGCAgc -5'
25542 3' -55.3 NC_005337.1 + 78349 0.66 0.890824
Target:  5'- ---gGGGCGCGGUCUCGaAGGUgGgcagCGu -3'
miRNA:   3'- cuugUUCGCGUCGGAGC-UCCAgCa---GC- -5'
25542 3' -55.3 NC_005337.1 + 32610 0.67 0.886695
Target:  5'- aGugGAGCGgucgguaguagacuuCGGCCUUGGGGUCGg-- -3'
miRNA:   3'- cUugUUCGC---------------GUCGGAGCUCCAGCagc -5'
25542 3' -55.3 NC_005337.1 + 45541 0.67 0.886695
Target:  5'- uGACGAGCGCcaugaaggcgaaauaGGUCUCGAaGUCGUa- -3'
miRNA:   3'- cUUGUUCGCG---------------UCGGAGCUcCAGCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.