miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25542 5' -62.5 NC_005337.1 + 29733 0.7 0.353041
Target:  5'- cGCGCGGugUUGCgGCGgaccaGCGGG-CCGg -3'
miRNA:   3'- aUGCGCCugGACG-CGCg----CGUCCaGGC- -5'
25542 5' -62.5 NC_005337.1 + 133452 0.72 0.289433
Target:  5'- aGCcCGGGCCcGCGCGCGCGgacGGcUCCGc -3'
miRNA:   3'- aUGcGCCUGGaCGCGCGCGU---CC-AGGC- -5'
25542 5' -62.5 NC_005337.1 + 38349 0.71 0.296034
Target:  5'- gACGUGGAgCgcgagGCGCGCGCGGccgCCGu -3'
miRNA:   3'- aUGCGCCUgGa----CGCGCGCGUCca-GGC- -5'
25542 5' -62.5 NC_005337.1 + 99018 0.71 0.302751
Target:  5'- gUGCGCGcGGCCUGCGagGCGCuGGacgCCa -3'
miRNA:   3'- -AUGCGC-CUGGACGCg-CGCGuCCa--GGc -5'
25542 5' -62.5 NC_005337.1 + 130776 0.71 0.302751
Target:  5'- cGCGCaGACCUGgGCGCcGCcGGUgCGg -3'
miRNA:   3'- aUGCGcCUGGACgCGCG-CGuCCAgGC- -5'
25542 5' -62.5 NC_005337.1 + 16039 0.71 0.316536
Target:  5'- cGCuGCGGcGCCUGcCGcCGCGCGGG-CCGc -3'
miRNA:   3'- aUG-CGCC-UGGAC-GC-GCGCGUCCaGGC- -5'
25542 5' -62.5 NC_005337.1 + 110350 0.71 0.330788
Target:  5'- cGCGCGcGCCUGCcgcggGCGCGCGGGcgCgCGg -3'
miRNA:   3'- aUGCGCcUGGACG-----CGCGCGUCCa-G-GC- -5'
25542 5' -62.5 NC_005337.1 + 74916 0.7 0.345507
Target:  5'- gGCGCGGcuggcgGCCUucGCGCGCGC-GG-CCGc -3'
miRNA:   3'- aUGCGCC------UGGA--CGCGCGCGuCCaGGC- -5'
25542 5' -62.5 NC_005337.1 + 66008 0.7 0.345507
Target:  5'- -cCGUGGGCgaGCGCGUGUGGG-CCa -3'
miRNA:   3'- auGCGCCUGgaCGCGCGCGUCCaGGc -5'
25542 5' -62.5 NC_005337.1 + 122212 0.72 0.282949
Target:  5'- gGCGCGGACgUGUcgGCGCGCAcG-CCGg -3'
miRNA:   3'- aUGCGCCUGgACG--CGCGCGUcCaGGC- -5'
25542 5' -62.5 NC_005337.1 + 61927 0.72 0.282949
Target:  5'- cGCGCGGaACUUG-GCGUugcgaggguucaGCAGGUCCGu -3'
miRNA:   3'- aUGCGCC-UGGACgCGCG------------CGUCCAGGC- -5'
25542 5' -62.5 NC_005337.1 + 121671 0.73 0.246445
Target:  5'- -uCGUGGACCUGCucaucCGCGCGGGcgCCa -3'
miRNA:   3'- auGCGCCUGGACGc----GCGCGUCCa-GGc -5'
25542 5' -62.5 NC_005337.1 + 132048 0.81 0.06909
Target:  5'- cGCGCGGuuCCUGCGCGCGCucgcGGcCCGg -3'
miRNA:   3'- aUGCGCCu-GGACGCGCGCGu---CCaGGC- -5'
25542 5' -62.5 NC_005337.1 + 45505 0.8 0.074685
Target:  5'- cGCGCGGACCUGCGCcucCGGGUCCu -3'
miRNA:   3'- aUGCGCCUGGACGCGcgcGUCCAGGc -5'
25542 5' -62.5 NC_005337.1 + 815 0.79 0.087204
Target:  5'- -cCGCGGAgCCguccGCGCGCGCGGGcCCGg -3'
miRNA:   3'- auGCGCCU-GGa---CGCGCGCGUCCaGGC- -5'
25542 5' -62.5 NC_005337.1 + 6881 0.75 0.179845
Target:  5'- aGCGUGcGCCcguccaugucgcGCGCGCGCGGGUCCGc -3'
miRNA:   3'- aUGCGCcUGGa-----------CGCGCGCGUCCAGGC- -5'
25542 5' -62.5 NC_005337.1 + 121978 0.74 0.205907
Target:  5'- aACGCGGAcaucgugcgcgagcuCCUGCGCGCG-GGGUgCGa -3'
miRNA:   3'- aUGCGCCU---------------GGACGCGCGCgUCCAgGC- -5'
25542 5' -62.5 NC_005337.1 + 81757 0.73 0.22434
Target:  5'- gGCGCcGuucuCCUGCGCGUGCAGGUUg- -3'
miRNA:   3'- aUGCGcCu---GGACGCGCGCGUCCAGgc -5'
25542 5' -62.5 NC_005337.1 + 103688 0.73 0.22434
Target:  5'- aGCGCGGACCUGCGCaacaAGGUCg- -3'
miRNA:   3'- aUGCGCCUGGACGCGcgcgUCCAGgc -5'
25542 5' -62.5 NC_005337.1 + 23074 0.73 0.245871
Target:  5'- aACGCGGcgGCCgugcccggcaucgUGCGCGCGguGGUCa- -3'
miRNA:   3'- aUGCGCC--UGG-------------ACGCGCGCguCCAGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.