miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25543 3' -61.1 NC_005337.1 + 30834 0.66 0.63617
Target:  5'- cAGCGCGucgagaccAGCGCGUucucggugaccacaaGCCCCAGCu---- -3'
miRNA:   3'- -UCGCGC--------UCGUGCA---------------CGGGGUCGcucuu -5'
25543 3' -61.1 NC_005337.1 + 99419 0.66 0.632114
Target:  5'- gGGCgGCGGGUGCGUGCugagCCgCGGCGuGGg -3'
miRNA:   3'- -UCG-CGCUCGUGCACG----GG-GUCGCuCUu -5'
25543 3' -61.1 NC_005337.1 + 41570 0.66 0.632114
Target:  5'- cGCGCuugGAGUcgucgaagACG-GcCCCCAGCGAGGg -3'
miRNA:   3'- uCGCG---CUCG--------UGCaC-GGGGUCGCUCUu -5'
25543 3' -61.1 NC_005337.1 + 108013 0.66 0.632114
Target:  5'- gAGgGCGGGCGCGUgauggcGCCCaAGC-AGAAg -3'
miRNA:   3'- -UCgCGCUCGUGCA------CGGGgUCGcUCUU- -5'
25543 3' -61.1 NC_005337.1 + 122722 0.66 0.632114
Target:  5'- cGCGUGcugucGCACGUGCCCgCGGaCGAc-- -3'
miRNA:   3'- uCGCGCu----CGUGCACGGG-GUC-GCUcuu -5'
25543 3' -61.1 NC_005337.1 + 109635 0.66 0.632114
Target:  5'- aGGcCGCGAGCGCGU-CCaCCAGCu---- -3'
miRNA:   3'- -UC-GCGCUCGUGCAcGG-GGUCGcucuu -5'
25543 3' -61.1 NC_005337.1 + 95188 0.66 0.632114
Target:  5'- cAGCGCGAGCGCugcacGUCCUGGCuGaAGAAc -3'
miRNA:   3'- -UCGCGCUCGUGca---CGGGGUCG-C-UCUU- -5'
25543 3' -61.1 NC_005337.1 + 49925 0.66 0.632114
Target:  5'- aGGCGCGAGCGCGgggacaGCacgaCCAGgCuGGAGg -3'
miRNA:   3'- -UCGCGCUCGUGCa-----CGg---GGUC-GcUCUU- -5'
25543 3' -61.1 NC_005337.1 + 10677 0.66 0.621974
Target:  5'- gAGCGCG-GCACGUGCggCCgCAGCu---- -3'
miRNA:   3'- -UCGCGCuCGUGCACG--GG-GUCGcucuu -5'
25543 3' -61.1 NC_005337.1 + 122390 0.66 0.621974
Target:  5'- uGCGCGAGguCGUGCUgCgCGGCGGc-- -3'
miRNA:   3'- uCGCGCUCguGCACGG-G-GUCGCUcuu -5'
25543 3' -61.1 NC_005337.1 + 72366 0.66 0.620961
Target:  5'- cGCGCGAucGCGCGgacgGCCgucgcggUCAGCGAGc- -3'
miRNA:   3'- uCGCGCU--CGUGCa---CGG-------GGUCGCUCuu -5'
25543 3' -61.1 NC_005337.1 + 19212 0.66 0.620961
Target:  5'- aGGCGCagaaggggcuGAGCACGacggccaUGCCCUGGCaGGGGc -3'
miRNA:   3'- -UCGCG----------CUCGUGC-------ACGGGGUCG-CUCUu -5'
25543 3' -61.1 NC_005337.1 + 68328 0.66 0.611842
Target:  5'- --gGCGGcacGCGCGUGCCCguGCcgGAGGAc -3'
miRNA:   3'- ucgCGCU---CGUGCACGGGguCG--CUCUU- -5'
25543 3' -61.1 NC_005337.1 + 38355 0.66 0.611842
Target:  5'- gAGCGCGAgGCGCGcgcgGCCgCCGucgccGCGAGc- -3'
miRNA:   3'- -UCGCGCU-CGUGCa---CGG-GGU-----CGCUCuu -5'
25543 3' -61.1 NC_005337.1 + 74617 0.66 0.611842
Target:  5'- gAGcCGCGAcgACGUGauguuCCCCGGCGGGGc -3'
miRNA:   3'- -UC-GCGCUcgUGCAC-----GGGGUCGCUCUu -5'
25543 3' -61.1 NC_005337.1 + 118937 0.66 0.611842
Target:  5'- cGCGCGGGCgcaGCGUGCgUCGcGCGAu-- -3'
miRNA:   3'- uCGCGCUCG---UGCACGgGGU-CGCUcuu -5'
25543 3' -61.1 NC_005337.1 + 14796 0.66 0.611842
Target:  5'- gGGCGCGGuGUuguucuCGUGCgUgAGCGAGGAc -3'
miRNA:   3'- -UCGCGCU-CGu-----GCACGgGgUCGCUCUU- -5'
25543 3' -61.1 NC_005337.1 + 80513 0.66 0.601725
Target:  5'- gGGgGCGGGCACGccgagGCCCgGGgCGcGGAGa -3'
miRNA:   3'- -UCgCGCUCGUGCa----CGGGgUC-GC-UCUU- -5'
25543 3' -61.1 NC_005337.1 + 127162 0.66 0.601725
Target:  5'- cGCGCGGGCGCGgacGUCC--GCGAGu- -3'
miRNA:   3'- uCGCGCUCGUGCa--CGGGguCGCUCuu -5'
25543 3' -61.1 NC_005337.1 + 28718 0.66 0.601725
Target:  5'- gGGUcCGuGUGCGUccuGCCCCAGCGGGu- -3'
miRNA:   3'- -UCGcGCuCGUGCA---CGGGGUCGCUCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.