miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25543 3' -61.1 NC_005337.1 + 80513 0.66 0.601725
Target:  5'- gGGgGCGGGCACGccgagGCCCgGGgCGcGGAGa -3'
miRNA:   3'- -UCgCGCUCGUGCa----CGGGgUC-GC-UCUU- -5'
25543 3' -61.1 NC_005337.1 + 127162 0.66 0.601725
Target:  5'- cGCGCGGGCGCGgacGUCC--GCGAGu- -3'
miRNA:   3'- uCGCGCUCGUGCa--CGGGguCGCUCuu -5'
25543 3' -61.1 NC_005337.1 + 30260 0.66 0.591629
Target:  5'- aGGCGCGGGCAgGcgGUCCaCGGCGcgcAGGu -3'
miRNA:   3'- -UCGCGCUCGUgCa-CGGG-GUCGC---UCUu -5'
25543 3' -61.1 NC_005337.1 + 110606 0.66 0.591629
Target:  5'- uGCGCGAGCAgGaUGCCggGGuCGAGGu -3'
miRNA:   3'- uCGCGCUCGUgC-ACGGggUC-GCUCUu -5'
25543 3' -61.1 NC_005337.1 + 84565 0.66 0.591629
Target:  5'- cGCGCGgcAGCGCGUGa-CC-GCGAGGGu -3'
miRNA:   3'- uCGCGC--UCGUGCACggGGuCGCUCUU- -5'
25543 3' -61.1 NC_005337.1 + 74617 0.66 0.611842
Target:  5'- gAGcCGCGAcgACGUGauguuCCCCGGCGGGGc -3'
miRNA:   3'- -UC-GCGCUcgUGCAC-----GGGGUCGCUCUu -5'
25543 3' -61.1 NC_005337.1 + 38355 0.66 0.611842
Target:  5'- gAGCGCGAgGCGCGcgcgGCCgCCGucgccGCGAGc- -3'
miRNA:   3'- -UCGCGCU-CGUGCa---CGG-GGU-----CGCUCuu -5'
25543 3' -61.1 NC_005337.1 + 68328 0.66 0.611842
Target:  5'- --gGCGGcacGCGCGUGCCCguGCcgGAGGAc -3'
miRNA:   3'- ucgCGCU---CGUGCACGGGguCG--CUCUU- -5'
25543 3' -61.1 NC_005337.1 + 122390 0.66 0.621974
Target:  5'- uGCGCGAGguCGUGCUgCgCGGCGGc-- -3'
miRNA:   3'- uCGCGCUCguGCACGG-G-GUCGCUcuu -5'
25543 3' -61.1 NC_005337.1 + 108013 0.66 0.632114
Target:  5'- gAGgGCGGGCGCGUgauggcGCCCaAGC-AGAAg -3'
miRNA:   3'- -UCgCGCUCGUGCA------CGGGgUCGcUCUU- -5'
25543 3' -61.1 NC_005337.1 + 6225 0.66 0.591629
Target:  5'- uGGUGC-AGCAgCGUGuCCCCGcGCGAGu- -3'
miRNA:   3'- -UCGCGcUCGU-GCAC-GGGGU-CGCUCuu -5'
25543 3' -61.1 NC_005337.1 + 122722 0.66 0.632114
Target:  5'- cGCGUGcugucGCACGUGCCCgCGGaCGAc-- -3'
miRNA:   3'- uCGCGCu----CGUGCACGGG-GUC-GCUcuu -5'
25543 3' -61.1 NC_005337.1 + 95188 0.66 0.632114
Target:  5'- cAGCGCGAGCGCugcacGUCCUGGCuGaAGAAc -3'
miRNA:   3'- -UCGCGCUCGUGca---CGGGGUCG-C-UCUU- -5'
25543 3' -61.1 NC_005337.1 + 99419 0.66 0.632114
Target:  5'- gGGCgGCGGGUGCGUGCugagCCgCGGCGuGGg -3'
miRNA:   3'- -UCG-CGCUCGUGCACG----GG-GUCGCuCUu -5'
25543 3' -61.1 NC_005337.1 + 30834 0.66 0.63617
Target:  5'- cAGCGCGucgagaccAGCGCGUucucggugaccacaaGCCCCAGCu---- -3'
miRNA:   3'- -UCGCGC--------UCGUGCA---------------CGGGGUCGcucuu -5'
25543 3' -61.1 NC_005337.1 + 28718 0.66 0.601725
Target:  5'- gGGUcCGuGUGCGUccuGCCCCAGCGGGu- -3'
miRNA:   3'- -UCGcGCuCGUGCA---CGGGGUCGCUCuu -5'
25543 3' -61.1 NC_005337.1 + 2831 0.66 0.591629
Target:  5'- aGGC-CGAGCGCG-GCCUCcGCgGAGAc -3'
miRNA:   3'- -UCGcGCUCGUGCaCGGGGuCG-CUCUu -5'
25543 3' -61.1 NC_005337.1 + 109635 0.66 0.632114
Target:  5'- aGGcCGCGAGCGCGU-CCaCCAGCu---- -3'
miRNA:   3'- -UC-GCGCUCGUGCAcGG-GGUCGcucuu -5'
25543 3' -61.1 NC_005337.1 + 111438 0.66 0.581563
Target:  5'- cAGCaCGAGCGgGUcGUCCuCGGUGAGGAa -3'
miRNA:   3'- -UCGcGCUCGUgCA-CGGG-GUCGCUCUU- -5'
25543 3' -61.1 NC_005337.1 + 99582 0.66 0.577546
Target:  5'- cGCGCGAguGCACGcugaccgugcuggGCCUggaCGGCGAGAGc -3'
miRNA:   3'- uCGCGCU--CGUGCa------------CGGG---GUCGCUCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.