miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25543 5' -55 NC_005337.1 + 813 0.65 0.929273
Target:  5'- --cUCcGC-GGAGCcgUCCGCGCGCGc- -3'
miRNA:   3'- ggaAGaCGaCCUUG--AGGCGCGCGUac -5'
25543 5' -55 NC_005337.1 + 44220 0.65 0.929273
Target:  5'- aCCUcaUCgaccgGCUGGu-CUCCGUGgGCGg- -3'
miRNA:   3'- -GGA--AGa----CGACCuuGAGGCGCgCGUac -5'
25543 5' -55 NC_005337.1 + 133142 0.65 0.929273
Target:  5'- -----cGC-GGAGCUggUCGCGCGCGUGc -3'
miRNA:   3'- ggaagaCGaCCUUGA--GGCGCGCGUAC- -5'
25543 5' -55 NC_005337.1 + 58979 0.65 0.929273
Target:  5'- uCCUg--GC-GGAGCUCggucgcuaCGCGCGCAUc -3'
miRNA:   3'- -GGAagaCGaCCUUGAG--------GCGCGCGUAc -5'
25543 5' -55 NC_005337.1 + 68613 0.65 0.929273
Target:  5'- gCCUUCgcGgUGGggUgguUCgGCGCGCAg- -3'
miRNA:   3'- -GGAAGa-CgACCuuG---AGgCGCGCGUac -5'
25543 5' -55 NC_005337.1 + 813 0.65 0.929273
Target:  5'- --cUCcGC-GGAGCcgUCCGCGCGCGc- -3'
miRNA:   3'- ggaAGaCGaCCUUG--AGGCGCGCGUac -5'
25543 5' -55 NC_005337.1 + 133126 0.66 0.923857
Target:  5'- aUCgagCUGUgauccccgcGGAGCUggUCGCGCGCGUGc -3'
miRNA:   3'- -GGaa-GACGa--------CCUUGA--GGCGCGCGUAC- -5'
25543 5' -55 NC_005337.1 + 129666 0.66 0.918193
Target:  5'- aCUUCUGCaGGAacacGCUCCuGCaccagcacGCGCAg- -3'
miRNA:   3'- gGAAGACGaCCU----UGAGG-CG--------CGCGUac -5'
25543 5' -55 NC_005337.1 + 26946 0.66 0.918193
Target:  5'- gCCUUgUgGCUGGu-CUUCGUGCGCu-- -3'
miRNA:   3'- -GGAAgA-CGACCuuGAGGCGCGCGuac -5'
25543 5' -55 NC_005337.1 + 61374 0.66 0.918193
Target:  5'- gUCUUCgcgGaCUGGAagaGCUCCGuCGCggagGCGUGc -3'
miRNA:   3'- -GGAAGa--C-GACCU---UGAGGC-GCG----CGUAC- -5'
25543 5' -55 NC_005337.1 + 117296 0.66 0.918193
Target:  5'- cCCgcgUGCUGGAGguggacgcCUCCGCGCacGCGUu -3'
miRNA:   3'- -GGaagACGACCUU--------GAGGCGCG--CGUAc -5'
25543 5' -55 NC_005337.1 + 133090 0.66 0.912284
Target:  5'- gCCUggaUGCaGGAGaUCCGUGCGCuccGUGa -3'
miRNA:   3'- -GGAag-ACGaCCUUgAGGCGCGCG---UAC- -5'
25543 5' -55 NC_005337.1 + 58027 0.66 0.912284
Target:  5'- aCCUUCg---GGGACggCCGUGCGCu-- -3'
miRNA:   3'- -GGAAGacgaCCUUGa-GGCGCGCGuac -5'
25543 5' -55 NC_005337.1 + 25281 0.66 0.912284
Target:  5'- -----cGCUGGAG-UUCGCGCGCAc- -3'
miRNA:   3'- ggaagaCGACCUUgAGGCGCGCGUac -5'
25543 5' -55 NC_005337.1 + 24984 0.66 0.912284
Target:  5'- uUCUUCgGCUGcaa---CGCGCGCAUGg -3'
miRNA:   3'- -GGAAGaCGACcuugagGCGCGCGUAC- -5'
25543 5' -55 NC_005337.1 + 69875 0.66 0.904237
Target:  5'- gCCg-CUGCUGGAccugugccgccGCUCCgacaacgugcuccuGCGCGCGcUGg -3'
miRNA:   3'- -GGaaGACGACCU-----------UGAGG--------------CGCGCGU-AC- -5'
25543 5' -55 NC_005337.1 + 92734 0.66 0.901678
Target:  5'- ---cCUGCUGGAggaggagguaaaagaGCUCCGCagaaaauGCGCGg- -3'
miRNA:   3'- ggaaGACGACCU---------------UGAGGCG-------CGCGUac -5'
25543 5' -55 NC_005337.1 + 42904 0.66 0.899734
Target:  5'- gUCUUCgagcggGCUccGGcgugcuGCUCCGCGCGCu-- -3'
miRNA:   3'- -GGAAGa-----CGA--CCu-----UGAGGCGCGCGuac -5'
25543 5' -55 NC_005337.1 + 21651 0.67 0.893099
Target:  5'- aUCUUCUcGCUGGGGCacgugCuCGCGCuGCAc- -3'
miRNA:   3'- -GGAAGA-CGACCUUGa----G-GCGCG-CGUac -5'
25543 5' -55 NC_005337.1 + 34974 0.67 0.893099
Target:  5'- cCCggcgCUGC-GGAACgCCGCGcCGCGc- -3'
miRNA:   3'- -GGaa--GACGaCCUUGaGGCGC-GCGUac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.