miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25543 5' -55 NC_005337.1 + 112653 1.11 0.0022
Target:  5'- aCCUUCUGCUGGAACUCCGCGCGCAUGa -3'
miRNA:   3'- -GGAAGACGACCUUGAGGCGCGCGUAC- -5'
25543 5' -55 NC_005337.1 + 110540 0.78 0.328962
Target:  5'- gCCUUCUGCUGccGCUCCGCG-GCGg- -3'
miRNA:   3'- -GGAAGACGACcuUGAGGCGCgCGUac -5'
25543 5' -55 NC_005337.1 + 60862 0.76 0.402166
Target:  5'- --aUCUcCUGGAACUCCGaCGCGCGUc -3'
miRNA:   3'- ggaAGAcGACCUUGAGGC-GCGCGUAc -5'
25543 5' -55 NC_005337.1 + 58476 0.74 0.514265
Target:  5'- gUCUcgCUGCUgacGGAGCUCCGCgaGCGCAg- -3'
miRNA:   3'- -GGAa-GACGA---CCUUGAGGCG--CGCGUac -5'
25543 5' -55 NC_005337.1 + 114301 0.73 0.554472
Target:  5'- aCCUcCUGgaGGAGCUCuCGCgGCGCcgGu -3'
miRNA:   3'- -GGAaGACgaCCUUGAG-GCG-CGCGuaC- -5'
25543 5' -55 NC_005337.1 + 37677 0.73 0.564677
Target:  5'- aCCUUgCUGUucacgcccgugUGGAcGC-CCGCGCGCGUGa -3'
miRNA:   3'- -GGAA-GACG-----------ACCU-UGaGGCGCGCGUAC- -5'
25543 5' -55 NC_005337.1 + 131644 0.72 0.595554
Target:  5'- aCCUUCcGCUucgaGGAGC-CCGUGCGCGc- -3'
miRNA:   3'- -GGAAGaCGA----CCUUGaGGCGCGCGUac -5'
25543 5' -55 NC_005337.1 + 54115 0.72 0.614213
Target:  5'- ---gCUGCuacgUGGAGCgcgacggccgcgCCGCGCGCAUGg -3'
miRNA:   3'- ggaaGACG----ACCUUGa-----------GGCGCGCGUAC- -5'
25543 5' -55 NC_005337.1 + 33256 0.72 0.637074
Target:  5'- --gUCUGCaggaUGGAGCUCUuccCGCGCGUGg -3'
miRNA:   3'- ggaAGACG----ACCUUGAGGc--GCGCGUAC- -5'
25543 5' -55 NC_005337.1 + 128004 0.72 0.647464
Target:  5'- aCgacgCUGCUGGAcguGCUCCGCGCa---- -3'
miRNA:   3'- gGaa--GACGACCU---UGAGGCGCGcguac -5'
25543 5' -55 NC_005337.1 + 38881 0.72 0.647464
Target:  5'- -gUUCUGCUcGGAG-UUCGCGCGCGUc -3'
miRNA:   3'- ggAAGACGA-CCUUgAGGCGCGCGUAc -5'
25543 5' -55 NC_005337.1 + 29633 0.71 0.657842
Target:  5'- cCCUUCgcUGCUGaucacGGGCUCCGagauGCGCGUGc -3'
miRNA:   3'- -GGAAG--ACGAC-----CUUGAGGCg---CGCGUAC- -5'
25543 5' -55 NC_005337.1 + 73138 0.71 0.661988
Target:  5'- aCCUUCUcGCaguucaaccagauccUGGGGCgcgCCGUGCGCAa- -3'
miRNA:   3'- -GGAAGA-CG---------------ACCUUGa--GGCGCGCGUac -5'
25543 5' -55 NC_005337.1 + 101209 0.71 0.667164
Target:  5'- aCCgcCUGCUucgcggaggucgcGGAgGCgUCCGCGCGCGUGc -3'
miRNA:   3'- -GGaaGACGA-------------CCU-UG-AGGCGCGCGUAC- -5'
25543 5' -55 NC_005337.1 + 48386 0.71 0.668199
Target:  5'- gCCca-UGCUGGAggGCUCCGUGUGCccGa -3'
miRNA:   3'- -GGaagACGACCU--UGAGGCGCGCGuaC- -5'
25543 5' -55 NC_005337.1 + 42719 0.71 0.668199
Target:  5'- aCCUgcucaugCUGCU-GAACaUCCGCGCGCu-- -3'
miRNA:   3'- -GGAa------GACGAcCUUG-AGGCGCGCGuac -5'
25543 5' -55 NC_005337.1 + 65708 0.71 0.668199
Target:  5'- ----gUGCUGGccgAGCUCCGCGC-CAUGg -3'
miRNA:   3'- ggaagACGACC---UUGAGGCGCGcGUAC- -5'
25543 5' -55 NC_005337.1 + 74958 0.71 0.688812
Target:  5'- ----gUGCUGGGGCUCCGCGgcuaCGCGa- -3'
miRNA:   3'- ggaagACGACCUUGAGGCGC----GCGUac -5'
25543 5' -55 NC_005337.1 + 103220 0.71 0.688812
Target:  5'- gCCUUCgUGCUGGAcauGCgucgCCGCaaGCGCcUGg -3'
miRNA:   3'- -GGAAG-ACGACCU---UGa---GGCG--CGCGuAC- -5'
25543 5' -55 NC_005337.1 + 2783 0.71 0.70313
Target:  5'- --aUCUGCaGGAacacgaacuugaggaACUCCGCGUGCGa- -3'
miRNA:   3'- ggaAGACGaCCU---------------UGAGGCGCGCGUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.