miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25543 5' -55 NC_005337.1 + 122619 0.68 0.856479
Target:  5'- ---cCUGCUGGAGCgccuguUCCGCGaGCAc- -3'
miRNA:   3'- ggaaGACGACCUUG------AGGCGCgCGUac -5'
25543 5' -55 NC_005337.1 + 67804 0.69 0.796665
Target:  5'- gCCUcgCUGg-GGAACagCGCGCGCAUc -3'
miRNA:   3'- -GGAa-GACgaCCUUGagGCGCGCGUAc -5'
25543 5' -55 NC_005337.1 + 47671 0.68 0.82339
Target:  5'- cCCggCaUGCUGGcgGGCgUCCGCGUGCGg- -3'
miRNA:   3'- -GGaaG-ACGACC--UUG-AGGCGCGCGUac -5'
25543 5' -55 NC_005337.1 + 66631 0.68 0.82339
Target:  5'- ----gUGCUGGAGCa-CGCGCGCGa- -3'
miRNA:   3'- ggaagACGACCUUGagGCGCGCGUac -5'
25543 5' -55 NC_005337.1 + 50390 0.68 0.831951
Target:  5'- gCCUg--GCgcgGGGGCgcgCCGCGCGUcgGu -3'
miRNA:   3'- -GGAagaCGa--CCUUGa--GGCGCGCGuaC- -5'
25543 5' -55 NC_005337.1 + 122854 0.68 0.831951
Target:  5'- ----gUGCUGGAgaGC-CCGCGCGCcUGc -3'
miRNA:   3'- ggaagACGACCU--UGaGGCGCGCGuAC- -5'
25543 5' -55 NC_005337.1 + 24360 0.68 0.848503
Target:  5'- ---cCUGCUGGAGgaguuCUCCGCGCuGUGUc -3'
miRNA:   3'- ggaaGACGACCUU-----GAGGCGCG-CGUAc -5'
25543 5' -55 NC_005337.1 + 80665 0.68 0.848503
Target:  5'- uCCUggaUCUGCgcGGcGCgcuUCCGCGCGCGc- -3'
miRNA:   3'- -GGA---AGACGa-CCuUG---AGGCGCGCGUac -5'
25543 5' -55 NC_005337.1 + 54088 0.68 0.856479
Target:  5'- gCCcgCgGCaGGAGCgcgUCCGCGCGCcgGc -3'
miRNA:   3'- -GGaaGaCGaCCUUG---AGGCGCGCGuaC- -5'
25543 5' -55 NC_005337.1 + 18462 0.69 0.778067
Target:  5'- aCUg--GCgGGGAgUCCGCGCGcCAUGu -3'
miRNA:   3'- gGAagaCGaCCUUgAGGCGCGC-GUAC- -5'
25543 5' -55 NC_005337.1 + 100029 0.7 0.709231
Target:  5'- aCCg--UGCUGGAgguGCUcgacgggaCCGUGCGCGUGg -3'
miRNA:   3'- -GGaagACGACCU---UGA--------GGCGCGCGUAC- -5'
25543 5' -55 NC_005337.1 + 74958 0.71 0.688812
Target:  5'- ----gUGCUGGGGCUCCGCGgcuaCGCGa- -3'
miRNA:   3'- ggaagACGACCUUGAGGCGC----GCGUac -5'
25543 5' -55 NC_005337.1 + 60862 0.76 0.402166
Target:  5'- --aUCUcCUGGAACUCCGaCGCGCGUc -3'
miRNA:   3'- ggaAGAcGACCUUGAGGC-GCGCGUAc -5'
25543 5' -55 NC_005337.1 + 37677 0.73 0.564677
Target:  5'- aCCUUgCUGUucacgcccgugUGGAcGC-CCGCGCGCGUGa -3'
miRNA:   3'- -GGAA-GACG-----------ACCU-UGaGGCGCGCGUAC- -5'
25543 5' -55 NC_005337.1 + 131644 0.72 0.595554
Target:  5'- aCCUUCcGCUucgaGGAGC-CCGUGCGCGc- -3'
miRNA:   3'- -GGAAGaCGA----CCUUGaGGCGCGCGUac -5'
25543 5' -55 NC_005337.1 + 29633 0.71 0.657842
Target:  5'- cCCUUCgcUGCUGaucacGGGCUCCGagauGCGCGUGc -3'
miRNA:   3'- -GGAAG--ACGAC-----CUUGAGGCg---CGCGUAC- -5'
25543 5' -55 NC_005337.1 + 73138 0.71 0.661988
Target:  5'- aCCUUCUcGCaguucaaccagauccUGGGGCgcgCCGUGCGCAa- -3'
miRNA:   3'- -GGAAGA-CG---------------ACCUUGa--GGCGCGCGUac -5'
25543 5' -55 NC_005337.1 + 101209 0.71 0.667164
Target:  5'- aCCgcCUGCUucgcggaggucgcGGAgGCgUCCGCGCGCGUGc -3'
miRNA:   3'- -GGaaGACGA-------------CCU-UG-AGGCGCGCGUAC- -5'
25543 5' -55 NC_005337.1 + 65708 0.71 0.668199
Target:  5'- ----gUGCUGGccgAGCUCCGCGC-CAUGg -3'
miRNA:   3'- ggaagACGACC---UUGAGGCGCGcGUAC- -5'
25543 5' -55 NC_005337.1 + 103220 0.71 0.688812
Target:  5'- gCCUUCgUGCUGGAcauGCgucgCCGCaaGCGCcUGg -3'
miRNA:   3'- -GGAAG-ACGACCU---UGa---GGCG--CGCGuAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.