miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25544 3' -60 NC_005337.1 + 53752 0.66 0.728433
Target:  5'- gCCCgGAgaugcaGCUGCGCGUCgUGCGGUu-- -3'
miRNA:   3'- aGGGaCU------UGGCGCGCAG-GCGCCAcuu -5'
25544 3' -60 NC_005337.1 + 133453 0.66 0.728433
Target:  5'- gCCCgGGcCCGCGCGcgcggacggcUCCGCGGa--- -3'
miRNA:   3'- aGGGaCUuGGCGCGC----------AGGCGCCacuu -5'
25544 3' -60 NC_005337.1 + 133453 0.66 0.728433
Target:  5'- gCCCgGGcCCGCGCGcgcggacggcUCCGCGGa--- -3'
miRNA:   3'- aGGGaCUuGGCGCGC----------AGGCGCCacuu -5'
25544 3' -60 NC_005337.1 + 19265 0.66 0.728433
Target:  5'- cUCUUGu-CCGCGCGgCUGCGuGUGGAg -3'
miRNA:   3'- aGGGACuuGGCGCGCaGGCGC-CACUU- -5'
25544 3' -60 NC_005337.1 + 66170 0.66 0.718696
Target:  5'- aCCCcGAguacgaccACCGcCGCGUCCGgGGcGAc -3'
miRNA:   3'- aGGGaCU--------UGGC-GCGCAGGCgCCaCUu -5'
25544 3' -60 NC_005337.1 + 118798 0.66 0.718696
Target:  5'- -gCCgucguGCCGCGCGcgCCGuCGGUGGc -3'
miRNA:   3'- agGGacu--UGGCGCGCa-GGC-GCCACUu -5'
25544 3' -60 NC_005337.1 + 125816 0.66 0.718696
Target:  5'- gUUCCUGcuGCCGCaCaUCgGCGGUGAAg -3'
miRNA:   3'- -AGGGACu-UGGCGcGcAGgCGCCACUU- -5'
25544 3' -60 NC_005337.1 + 65985 0.66 0.708888
Target:  5'- cCUCUGGugcgagGCCGUGCGUCcCGUGGgcGAGc -3'
miRNA:   3'- aGGGACU------UGGCGCGCAG-GCGCCa-CUU- -5'
25544 3' -60 NC_005337.1 + 42135 0.66 0.708888
Target:  5'- gCgCUGGcccGCgGCGCGUCCGgGGUcugGAAg -3'
miRNA:   3'- aGgGACU---UGgCGCGCAGGCgCCA---CUU- -5'
25544 3' -60 NC_005337.1 + 18946 0.66 0.708888
Target:  5'- gCCCgccGCCGgGCGUCCGagcaCGGUGu- -3'
miRNA:   3'- aGGGacuUGGCgCGCAGGC----GCCACuu -5'
25544 3' -60 NC_005337.1 + 41511 0.66 0.699016
Target:  5'- aUCCUGAgauGCCGCGCauuuUCUGCGGa--- -3'
miRNA:   3'- aGGGACU---UGGCGCGc---AGGCGCCacuu -5'
25544 3' -60 NC_005337.1 + 66680 0.66 0.699016
Target:  5'- -aCgaGAACCGCaUGgCCGCGGUGGGg -3'
miRNA:   3'- agGgaCUUGGCGcGCaGGCGCCACUU- -5'
25544 3' -60 NC_005337.1 + 39014 0.66 0.699016
Target:  5'- -aCCUGGGcCCGCGCGUCUGCc----- -3'
miRNA:   3'- agGGACUU-GGCGCGCAGGCGccacuu -5'
25544 3' -60 NC_005337.1 + 98409 0.66 0.68909
Target:  5'- gUCCCgcaguuCCGCGCGUCCGCc----- -3'
miRNA:   3'- -AGGGacuu--GGCGCGCAGGCGccacuu -5'
25544 3' -60 NC_005337.1 + 129578 0.66 0.688095
Target:  5'- cCCCUG-GCCGUGCugcucaaGUCCGCGcgagcgaccGUGGAg -3'
miRNA:   3'- aGGGACuUGGCGCG-------CAGGCGC---------CACUU- -5'
25544 3' -60 NC_005337.1 + 8302 0.66 0.679118
Target:  5'- -gUCUGcAGCCGCGCGuUCCGCGcGUu-- -3'
miRNA:   3'- agGGAC-UUGGCGCGC-AGGCGC-CAcuu -5'
25544 3' -60 NC_005337.1 + 117616 0.66 0.679118
Target:  5'- aCCCUcgucucGAccgGCCGcCGCGUcaccgCCGUGGUGGAg -3'
miRNA:   3'- aGGGA------CU---UGGC-GCGCA-----GGCGCCACUU- -5'
25544 3' -60 NC_005337.1 + 93726 0.67 0.669109
Target:  5'- aUCCUcGAgaaccgcaccACCGCGCG-CCGCGGcGGc -3'
miRNA:   3'- -AGGGaCU----------UGGCGCGCaGGCGCCaCUu -5'
25544 3' -60 NC_005337.1 + 39255 0.67 0.659071
Target:  5'- gCCCgccGucCCGC-CGUUCGCGGUGGc -3'
miRNA:   3'- aGGGa--CuuGGCGcGCAGGCGCCACUu -5'
25544 3' -60 NC_005337.1 + 103241 0.67 0.638939
Target:  5'- gCCgCUGGugCGCGCccgCGCGGUGGc -3'
miRNA:   3'- aGG-GACUugGCGCGcagGCGCCACUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.