miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25544 5' -51.9 NC_005337.1 + 84456 0.66 0.988109
Target:  5'- aGcCCGCGGAGgg--CGCGGc-CGGCa -3'
miRNA:   3'- gCaGGUGCUUCaagaGCGCCauGUCG- -5'
25544 5' -51.9 NC_005337.1 + 132028 0.66 0.988109
Target:  5'- -uUCCGCGAguuccucuccaaGGUccUCUacggCGCGGUGguGCa -3'
miRNA:   3'- gcAGGUGCU------------UCA--AGA----GCGCCAUguCG- -5'
25544 5' -51.9 NC_005337.1 + 65652 0.66 0.988109
Target:  5'- cCG-CCACGcugGAGUUCgagGUGGUGCccAGCg -3'
miRNA:   3'- -GCaGGUGC---UUCAAGag-CGCCAUG--UCG- -5'
25544 5' -51.9 NC_005337.1 + 88090 0.66 0.988109
Target:  5'- -aUCgGCGAcgacuGGUcgaUCUCGUcGUACAGCg -3'
miRNA:   3'- gcAGgUGCU-----UCA---AGAGCGcCAUGUCG- -5'
25544 5' -51.9 NC_005337.1 + 67479 0.66 0.988109
Target:  5'- -uUCguCGAGGgcgUCUCGCGGcuggagacGCGGCc -3'
miRNA:   3'- gcAGguGCUUCa--AGAGCGCCa-------UGUCG- -5'
25544 5' -51.9 NC_005337.1 + 119043 0.66 0.987958
Target:  5'- cCG-CCAgGAccGGUUCgaccuccUCGCGGUgugucGCAGCc -3'
miRNA:   3'- -GCaGGUgCU--UCAAG-------AGCGCCA-----UGUCG- -5'
25544 5' -51.9 NC_005337.1 + 40004 0.66 0.986532
Target:  5'- aGgCCACGGAGgccaUCcgCGCGGUGgAGa -3'
miRNA:   3'- gCaGGUGCUUCa---AGa-GCGCCAUgUCg -5'
25544 5' -51.9 NC_005337.1 + 133140 0.66 0.986532
Target:  5'- --cCCGCGGAGcuggUCgCGCGcGUGCuGCg -3'
miRNA:   3'- gcaGGUGCUUCa---AGaGCGC-CAUGuCG- -5'
25544 5' -51.9 NC_005337.1 + 112293 0.66 0.986532
Target:  5'- cCGUCCGCGAacagcgGGUUgCUCGCGaGgucgUAGUu -3'
miRNA:   3'- -GCAGGUGCU------UCAA-GAGCGC-Cau--GUCG- -5'
25544 5' -51.9 NC_005337.1 + 133140 0.66 0.986532
Target:  5'- --cCCGCGGAGcuggUCgCGCGcGUGCuGCg -3'
miRNA:   3'- gcaGGUGCUUCa---AGaGCGC-CAUGuCG- -5'
25544 5' -51.9 NC_005337.1 + 14066 0.66 0.986532
Target:  5'- uGUCCgccucgGCGAGGUgCUCGaaGUcCAGCa -3'
miRNA:   3'- gCAGG------UGCUUCAaGAGCgcCAuGUCG- -5'
25544 5' -51.9 NC_005337.1 + 95081 0.66 0.986532
Target:  5'- gGUCCGCGuag--CcCGCGGcgACGGCc -3'
miRNA:   3'- gCAGGUGCuucaaGaGCGCCa-UGUCG- -5'
25544 5' -51.9 NC_005337.1 + 60044 0.66 0.986532
Target:  5'- gGUCgGCGAugugcucccacaGGUUCagGUGGUGC-GCg -3'
miRNA:   3'- gCAGgUGCU------------UCAAGagCGCCAUGuCG- -5'
25544 5' -51.9 NC_005337.1 + 81290 0.66 0.986532
Target:  5'- gGagCACGcgccuGaUCUCGCGGUcCAGCa -3'
miRNA:   3'- gCagGUGCuu---CaAGAGCGCCAuGUCG- -5'
25544 5' -51.9 NC_005337.1 + 123610 0.66 0.986532
Target:  5'- aCGUgCCGCGcucgcGGGUgcugacgCUCGUGGagcucUGCAGCg -3'
miRNA:   3'- -GCA-GGUGC-----UUCAa------GAGCGCC-----AUGUCG- -5'
25544 5' -51.9 NC_005337.1 + 110194 0.66 0.986532
Target:  5'- gGUCCAUGAGcaUCUUgaugGCGGccGCGGCc -3'
miRNA:   3'- gCAGGUGCUUcaAGAG----CGCCa-UGUCG- -5'
25544 5' -51.9 NC_005337.1 + 90950 0.66 0.986366
Target:  5'- gCGUCgGCGAGccccgagcaguacGUgacgucCUCGUGGUcgaACAGCg -3'
miRNA:   3'- -GCAGgUGCUU-------------CAa-----GAGCGCCA---UGUCG- -5'
25544 5' -51.9 NC_005337.1 + 11640 0.66 0.984799
Target:  5'- gCGUCuUGCGgcGgugCUCGCGGaACAGg -3'
miRNA:   3'- -GCAG-GUGCuuCaa-GAGCGCCaUGUCg -5'
25544 5' -51.9 NC_005337.1 + 63669 0.66 0.984799
Target:  5'- aCGUCCACGAGcaUgUCGCGGauguUGGUc -3'
miRNA:   3'- -GCAGGUGCUUcaAgAGCGCCau--GUCG- -5'
25544 5' -51.9 NC_005337.1 + 6025 0.66 0.984799
Target:  5'- gCGUCCGCccaGAGUUgUCGCGG-GCGu- -3'
miRNA:   3'- -GCAGGUGc--UUCAAgAGCGCCaUGUcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.