miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25544 5' -51.9 NC_005337.1 + 61413 0.69 0.929589
Target:  5'- aCGUCCAgcAGGU--UCGCGG-ACAGCc -3'
miRNA:   3'- -GCAGGUgcUUCAagAGCGCCaUGUCG- -5'
25544 5' -51.9 NC_005337.1 + 86310 0.72 0.839888
Target:  5'- cCGUCCACGAAGaagC-CGuCGGUcgcCAGCg -3'
miRNA:   3'- -GCAGGUGCUUCaa-GaGC-GCCAu--GUCG- -5'
25544 5' -51.9 NC_005337.1 + 75921 0.71 0.848147
Target:  5'- aGUCCGCGAAGag--CGCGGccACGGUc -3'
miRNA:   3'- gCAGGUGCUUCaagaGCGCCa-UGUCG- -5'
25544 5' -51.9 NC_005337.1 + 81049 0.71 0.864041
Target:  5'- uGUCCAUGA---UCUCGCGGaGCucGCg -3'
miRNA:   3'- gCAGGUGCUucaAGAGCGCCaUGu-CG- -5'
25544 5' -51.9 NC_005337.1 + 101236 0.71 0.864041
Target:  5'- gCGUCCGCGcgcGUgCUCGCGcuggACGGCg -3'
miRNA:   3'- -GCAGGUGCuu-CAaGAGCGCca--UGUCG- -5'
25544 5' -51.9 NC_005337.1 + 36416 0.71 0.864041
Target:  5'- --aCCACGGAGUcCUCGCGcGccucacccggcUGCAGCu -3'
miRNA:   3'- gcaGGUGCUUCAaGAGCGC-C-----------AUGUCG- -5'
25544 5' -51.9 NC_005337.1 + 22640 0.7 0.893152
Target:  5'- -aUCCGCGAGGccUUCggCGCGGacgcGCGGCu -3'
miRNA:   3'- gcAGGUGCUUC--AAGa-GCGCCa---UGUCG- -5'
25544 5' -51.9 NC_005337.1 + 120545 0.7 0.906287
Target:  5'- uGUUCAuggUGAAGUcCUCGCGGagcucgguggugUGCGGCa -3'
miRNA:   3'- gCAGGU---GCUUCAaGAGCGCC------------AUGUCG- -5'
25544 5' -51.9 NC_005337.1 + 16077 0.69 0.929589
Target:  5'- aGUCUACGAAGcUCgUCGuUGGUuaggucgcuGCAGCu -3'
miRNA:   3'- gCAGGUGCUUCaAG-AGC-GCCA---------UGUCG- -5'
25544 5' -51.9 NC_005337.1 + 77435 0.72 0.836529
Target:  5'- gGcCCGCguggagggcaugugGAGGUUCUCGUGGUggcgugcGCGGCg -3'
miRNA:   3'- gCaGGUG--------------CUUCAAGAGCGCCA-------UGUCG- -5'
25544 5' -51.9 NC_005337.1 + 84891 0.72 0.831431
Target:  5'- uCGgCCGCGggGg----GCGGUGCGGCg -3'
miRNA:   3'- -GCaGGUGCuuCaagagCGCCAUGUCG- -5'
25544 5' -51.9 NC_005337.1 + 99469 0.73 0.786464
Target:  5'- gCGUgCGCGAGGgcgUCuUCGUGGccgUGCGGCg -3'
miRNA:   3'- -GCAgGUGCUUCa--AG-AGCGCC---AUGUCG- -5'
25544 5' -51.9 NC_005337.1 + 25149 0.81 0.381162
Target:  5'- uGUCCGgcgacuUGAAGUUCUUGUGGUGCAcGCg -3'
miRNA:   3'- gCAGGU------GCUUCAAGAGCGCCAUGU-CG- -5'
25544 5' -51.9 NC_005337.1 + 10108 0.75 0.666043
Target:  5'- gGUCCACGAAGgUCaCGCGGuUGCcgAGCu -3'
miRNA:   3'- gCAGGUGCUUCaAGaGCGCC-AUG--UCG- -5'
25544 5' -51.9 NC_005337.1 + 30795 0.74 0.693059
Target:  5'- gCGUCCACGAAGaggUCggccucggugaaGCGGUggugGCAGCg -3'
miRNA:   3'- -GCAGGUGCUUCa--AGag----------CGCCA----UGUCG- -5'
25544 5' -51.9 NC_005337.1 + 11588 0.74 0.697187
Target:  5'- -cUUCGCGGAGUcgaUGCGGUGCAGCa -3'
miRNA:   3'- gcAGGUGCUUCAagaGCGCCAUGUCG- -5'
25544 5' -51.9 NC_005337.1 + 7379 0.74 0.713603
Target:  5'- uGUCCGCGcAGUUggcguucCUCGCcacgagcacgcagaGGUGCAGCg -3'
miRNA:   3'- gCAGGUGCuUCAA-------GAGCG--------------CCAUGUCG- -5'
25544 5' -51.9 NC_005337.1 + 77060 0.74 0.727816
Target:  5'- aG-CCGCcGAGUUUUCGCGGgcGCGGCa -3'
miRNA:   3'- gCaGGUGcUUCAAGAGCGCCa-UGUCG- -5'
25544 5' -51.9 NC_005337.1 + 59127 0.74 0.727816
Target:  5'- -cUUCGgGAAGUUCUaccugcccgUGCGGUACAGCc -3'
miRNA:   3'- gcAGGUgCUUCAAGA---------GCGCCAUGUCG- -5'
25544 5' -51.9 NC_005337.1 + 77356 0.73 0.767394
Target:  5'- uGUCCcCGAAGUagccccggaUCcCGCGGUGCcGCa -3'
miRNA:   3'- gCAGGuGCUUCA---------AGaGCGCCAUGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.