miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
25545 3' -53.9 NC_005337.1 + 10443 0.66 0.959228
Target:  5'- gCGGCgGUGcGCGCGUCGUgcgcCAGGaccUCCGu -3'
miRNA:   3'- -GCUG-UACuUGCGCGGCAa---GUCC---AGGU- -5'
25545 3' -53.9 NC_005337.1 + 91209 0.66 0.959228
Target:  5'- gGAC--GGGCGCGCCGccgguggUCAGcgcGUCCAu -3'
miRNA:   3'- gCUGuaCUUGCGCGGCa------AGUC---CAGGU- -5'
25545 3' -53.9 NC_005337.1 + 66107 0.66 0.959228
Target:  5'- gCGGCGUcuGCGCGCgcguggaGUUCAaGUCCAa -3'
miRNA:   3'- -GCUGUAcuUGCGCGg------CAAGUcCAGGU- -5'
25545 3' -53.9 NC_005337.1 + 60023 0.66 0.959228
Target:  5'- nGAagGUGGugGCGgaGUUCGGGUCg- -3'
miRNA:   3'- gCUg-UACUugCGCggCAAGUCCAGgu -5'
25545 3' -53.9 NC_005337.1 + 47598 0.66 0.959228
Target:  5'- gGGCGUGGGCGaCGCCGcgCGcgcGG-CCGc -3'
miRNA:   3'- gCUGUACUUGC-GCGGCaaGU---CCaGGU- -5'
25545 3' -53.9 NC_005337.1 + 127196 0.66 0.959228
Target:  5'- aCGACAUGAcCGCGCUG--CAcGUCUAc -3'
miRNA:   3'- -GCUGUACUuGCGCGGCaaGUcCAGGU- -5'
25545 3' -53.9 NC_005337.1 + 12537 0.66 0.958858
Target:  5'- gCGAgcucCGUGAACGCGCauuguagUGUUUAGGUUa- -3'
miRNA:   3'- -GCU----GUACUUGCGCG-------GCAAGUCCAGgu -5'
25545 3' -53.9 NC_005337.1 + 14178 0.66 0.955421
Target:  5'- aCGACAguAGCGUGuCCGUgucgCagGGGUCCGc -3'
miRNA:   3'- -GCUGUacUUGCGC-GGCAa---G--UCCAGGU- -5'
25545 3' -53.9 NC_005337.1 + 117306 0.66 0.955421
Target:  5'- gGAgGUGGAcgccucCGCGCacgCGUUCGGGUUCu -3'
miRNA:   3'- gCUgUACUU------GCGCG---GCAAGUCCAGGu -5'
25545 3' -53.9 NC_005337.1 + 115961 0.66 0.95138
Target:  5'- uGGcCAUGGACGCGCUGUUCcGcugCCu -3'
miRNA:   3'- gCU-GUACUUGCGCGGCAAGuCca-GGu -5'
25545 3' -53.9 NC_005337.1 + 80033 0.66 0.95138
Target:  5'- cCGGCccGGACGCGCCGgaCgAGGagaUCUAc -3'
miRNA:   3'- -GCUGuaCUUGCGCGGCaaG-UCC---AGGU- -5'
25545 3' -53.9 NC_005337.1 + 50888 0.66 0.95138
Target:  5'- gGACAUGGuuuggcgggcgcGCGCGCCcagCGgccGGUCCGc -3'
miRNA:   3'- gCUGUACU------------UGCGCGGcaaGU---CCAGGU- -5'
25545 3' -53.9 NC_005337.1 + 7314 0.66 0.948841
Target:  5'- uGGCGUGuacccgcacacguCGCGCgCGUUCAcGUCCGc -3'
miRNA:   3'- gCUGUACuu-----------GCGCG-GCAAGUcCAGGU- -5'
25545 3' -53.9 NC_005337.1 + 83657 0.66 0.9471
Target:  5'- uGACcUGGACaGCaGCCGgcgCAGGUCg- -3'
miRNA:   3'- gCUGuACUUG-CG-CGGCaa-GUCCAGgu -5'
25545 3' -53.9 NC_005337.1 + 85982 0.66 0.9471
Target:  5'- -cGCAUGcggaGGCGCGaCCG--CGGGUCCAg -3'
miRNA:   3'- gcUGUAC----UUGCGC-GGCaaGUCCAGGU- -5'
25545 3' -53.9 NC_005337.1 + 3878 0.66 0.942579
Target:  5'- cCGcGCAUGAGCGUcuuGaggaCGcgCAGGUCCAc -3'
miRNA:   3'- -GC-UGUACUUGCG---Cg---GCaaGUCCAGGU- -5'
25545 3' -53.9 NC_005337.1 + 30471 0.66 0.937814
Target:  5'- gGACAUGAGCGCGaCgGUgacguGGUUCc -3'
miRNA:   3'- gCUGUACUUGCGC-GgCAagu--CCAGGu -5'
25545 3' -53.9 NC_005337.1 + 53918 0.66 0.937814
Target:  5'- cCGGCGcGAACGCGUgcugGUUCAGGUa-- -3'
miRNA:   3'- -GCUGUaCUUGCGCGg---CAAGUCCAggu -5'
25545 3' -53.9 NC_005337.1 + 106588 0.67 0.932803
Target:  5'- uGGCGUGGACGCGCgaccUgGGGcCCAu -3'
miRNA:   3'- gCUGUACUUGCGCGgca-AgUCCaGGU- -5'
25545 3' -53.9 NC_005337.1 + 75421 0.67 0.932803
Target:  5'- aCGGCGcgcGAGCGCGCgaaGUcCAGGUCgAg -3'
miRNA:   3'- -GCUGUa--CUUGCGCGg--CAaGUCCAGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.